Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0452100-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:22549901:22555033:1 gene:Os04g0452100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1b description:Cryptochrome 1, blue light photoreceptor (Os04t0452100-01);Cryptochrome 1b, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os04t0452100-02)
Sequence	ATGTCGGTGTCGTCGTCGTCCATGGGCGGCGGCGGTGGCGGGGACGCCGGGGGGAGGACG GTGGTGTGGTTCAGGAGGGACCTGAGGGTGGAGGACAACCCGGCGCTGGCGGCGGCGGCG CGCGCCGGCGGGGAGGTGGTGCCGGCGTACGTGTGGGCGCCCGAGGAGGACGGGCCGTAC TACCCCGGCCGCGTGTCGCGGTGGTGGCTCAGCCAGAGCCTGAAGCACCTCGACGCCTCG CTGCGGCGGCTCGGCGCCGGCAAGCTGGTGACGAGGAGGTCGGCCGACGCCGTCGTCGCG CTGCTCCAGCTCGTCCGCGACACCGGCGCCACGCGGCTCTTCTTCAACCATCTCTACGAC CCGATCTCACTGGTCAGGGACCACCGGCTGAAGGAGATGATGGCAGCGGAGGGCATCATC GTGCAGTCTTTCAATGCAGACCTGCTGTACGAGCCGTGGGAAGTTGTCGACGACGAAGGC CAATCTTTCACCATGTTTGCGCCTTTCTGGAATAGGTGCCTCAGCATGCCGTATGATCCT GCCGCACCGCTGTTGCCTCCTAAGAGAATCAATTCAGGTGACTTATCAATGTGCCCATCA GATGATCTGATCTTTGAGGATGACTCGGAGAGGGGAAGCAATGCACTTCTTGCCCGAGCA TGGTCACCAGGCTGGCAGAATGCAGACAAGGCACTGACAGCTTTCCTGAATGGTCCTTTG ATCCACTACTCAGTGAATCGCAAGAAAGCAGACAGTGCAAGTACCTCCCTCTTATCACCG TACCTGCATTTCGGTGAGCTGAGTGTGCGCAAGGTCTTCCACCTTGTTCGGATGAAGCAG CTTGTGTGGAGCAATGAGGGCAATCGTGCAGCTGAAGAGAGCTGCACCCTGTTCCTTCGG TCCATTGGTCTCCGGGAGTACTCACGGTATCTGAGTTTCAACCACCCATGCAGCCATGAG AAGCCCCTTTTGGCACACCTCAGGTTCTTCCCCTGGGTGATCAATGAGTGCTACTTCAAG ATATGGCGGCAGGGAAGGACTGGTTACCCCCTTGTTGATGCCGGCATGAGGGAGCTATGG GCTACAGGGTGGTTGCATGATCGTATTCGTGTGGTAGTGTCAAGTTTCTTCGTCAAAGTC CTTCAACTACCATGGCGATGGGGGATGAAGTACTTTTGGGACACATTATTAGACGCAGAT CTTGAGAGCGATGCACTAGGCTGGCAGTATATCTCTGGCTCTCTTCCTGATGGCCGAGAA CTTGACCGCATTGACAATCCTCAGCTCGAAGGCTACAAGTTTGATCCGCATGGTGAGTAT GTCCGAAGGTGGCTTCCGGAGCTTGCAAGGTTGCCAACAGAATGGATACACCATCCATGG GATGCACCCGCATCTGTGCTGCAAGCTGCAGGAGTCGAGTTAGGCTCCAACTACCCTCTC CCTATAGTTGGGCTAGATGCAGCCAACGCCAGGCTGCAAGAAGCCCTGTCAGAAATGTGG CAGCTTGAGGCAGCATCCAGGGCCGCAATGGACAATGGAATGGAAGAAGGCCTTGGCGAC TCCTCGGAGGTTCCACCAATTGAATTTCCTCGAGAACTACAGATGGAAGTTGACCGAGAA CCAGCTCGAGTAACAGCCAATGTGCTGACAACAGCTCGAAGACGCGAGGATCAGATGGTG CCAACAATGACATCTTCACTAAACAGGGCTGAAACTGAGATTTCTGCCGATTTTATGAAC AGTGTGGACAGTAGGGCAGAGGTACCAACCCGTGTGAATTTTGAGCCTCGAACTGAGCGG GAAGAAAATTTCCGTACCACTGCGGGAAATGTTGCTAGAACAAATGGTATTCATGAGCAC AATAATTTCCAGCAACCTCAGCACCGTATGCGAAATGTTCTAGCACCATCTGTATCAGAG GCATCAAGTGGCTGGACTGGGAGAGAGGGAGGCGTAGTCCCAGTTTGGTCGCCTCCTGCA GCATCAGACCATTCAGAAACTTTTGCCTCTGATGAAGCTGACATTTCTAGTAGGAGTTAT TTGGATAGGCATCCACAGTCGCACCGGTTGATGAACTGGAGTCAATTATCCCAGTCATTG TGA

Peptide Sequence

PEP ID	Os04t0452100-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:22549901:22555033:1 gene:Os04g0452100 transcript:Os04t0452100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1b description:Cryptochrome 1, blue light photoreceptor (Os04t0452100-01);Cryptochrome 1b, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os04t0452100-02)
Sequence	MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPY YPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYD PISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDP AAPLLPPKRINSGDLSMCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPL IHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR SIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELW ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE LDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPL PIVGLDAANARLQEALSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDRE PARVTANVLTTARRREDQMVPTMTSSLNRAETEISADFMNSVDSRAEVPTRVNFEPRTER EENFRTTAGNVARTNGIHEHNNFQQPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPA ASDHSETFASDEADISSRSYLDRHPQSHRLMNWSQLSQSL

Transcript Sequence

Transcript ID	Os04t0452100-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:22549901:22555033:1 gene:Os04g0452100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1b description:Cryptochrome 1, blue light photoreceptor (Os04t0452100-01);Cryptochrome 1b, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os04t0452100-02)
Sequence	CAACCTCTCTCTCCATTGGACTAGAAACGCCAACTGCAAGAACACCCAACACCAAACAAA GACCGGCCAAAATTTTATACACCGGAAAATACACGGGAAAAGAAAGGAAGAGAAAAAAAA AGGAGGCGCCTTTGCTGCTTTGCAGTTGCAGAGCAGCTCGCGCCGCGCGCGTACACTCGC TTTGCTTTGCTTCTTCGCCGGAAAAAACCCAATCCAATCAAGCGGAGCTCGAGCTCCAAT CCAGCTATAGTTGGGAATCTCGAGGGGGGAAGGAGGAAGAAGAAGAAGAAGAAGCAGTGA GCTTTGGAGTTTGAGCTGGCTAGCTCCATGCTTCGGGTGACGTCCTCTTGATCCAAGAAC TCGTGGGGGGGTTGGTTCTTGGATTGGATTGGGTGCATATCATGTCGGTGTCGTCGTCGT CCATGGGCGGCGGCGGTGGCGGGGACGCCGGGGGGAGGACGGTGGTGTGGTTCAGGAGGG ACCTGAGGGTGGAGGACAACCCGGCGCTGGCGGCGGCGGCGCGCGCCGGCGGGGAGGTGG TGCCGGCGTACGTGTGGGCGCCCGAGGAGGACGGGCCGTACTACCCCGGCCGCGTGTCGC GGTGGTGGCTCAGCCAGAGCCTGAAGCACCTCGACGCCTCGCTGCGGCGGCTCGGCGCCG GCAAGCTGGTGACGAGGAGGTCGGCCGACGCCGTCGTCGCGCTGCTCCAGCTCGTCCGCG ACACCGGCGCCACGCGGCTCTTCTTCAACCATCTCTACGACCCGATCTCACTGGTCAGGG ACCACCGGCTGAAGGAGATGATGGCAGCGGAGGGCATCATCGTGCAGTCTTTCAATGCAG ACCTGCTGTACGAGCCGTGGGAAGTTGTCGACGACGAAGGCCAATCTTTCACCATGTTTG CGCCTTTCTGGAATAGGTGCCTCAGCATGCCGTATGATCCTGCCGCACCGCTGTTGCCTC CTAAGAGAATCAATTCAGGTGACTTATCAATGTGCCCATCAGATGATCTGATCTTTGAGG ATGACTCGGAGAGGGGAAGCAATGCACTTCTTGCCCGAGCATGGTCACCAGGCTGGCAGA ATGCAGACAAGGCACTGACAGCTTTCCTGAATGGTCCTTTGATCCACTACTCAGTGAATC GCAAGAAAGCAGACAGTGCAAGTACCTCCCTCTTATCACCGTACCTGCATTTCGGTGAGC TGAGTGTGCGCAAGGTCTTCCACCTTGTTCGGATGAAGCAGCTTGTGTGGAGCAATGAGG GCAATCGTGCAGCTGAAGAGAGCTGCACCCTGTTCCTTCGGTCCATTGGTCTCCGGGAGT ACTCACGGTATCTGAGTTTCAACCACCCATGCAGCCATGAGAAGCCCCTTTTGGCACACC TCAGGTTCTTCCCCTGGGTGATCAATGAGTGCTACTTCAAGATATGGCGGCAGGGAAGGA CTGGTTACCCCCTTGTTGATGCCGGCATGAGGGAGCTATGGGCTACAGGGTGGTTGCATG ATCGTATTCGTGTGGTAGTGTCAAGTTTCTTCGTCAAAGTCCTTCAACTACCATGGCGAT GGGGGATGAAGTACTTTTGGGACACATTATTAGACGCAGATCTTGAGAGCGATGCACTAG GCTGGCAGTATATCTCTGGCTCTCTTCCTGATGGCCGAGAACTTGACCGCATTGACAATC CTCAGCTCGAAGGCTACAAGTTTGATCCGCATGGTGAGTATGTCCGAAGGTGGCTTCCGG AGCTTGCAAGGTTGCCAACAGAATGGATACACCATCCATGGGATGCACCCGCATCTGTGC TGCAAGCTGCAGGAGTCGAGTTAGGCTCCAACTACCCTCTCCCTATAGTTGGGCTAGATG CAGCCAACGCCAGGCTGCAAGAAGCCCTGTCAGAAATGTGGCAGCTTGAGGCAGCATCCA GGGCCGCAATGGACAATGGAATGGAAGAAGGCCTTGGCGACTCCTCGGAGGTTCCACCAA TTGAATTTCCTCGAGAACTACAGATGGAAGTTGACCGAGAACCAGCTCGAGTAACAGCCA ATGTGCTGACAACAGCTCGAAGACGCGAGGATCAGATGGTGCCAACAATGACATCTTCAC TAAACAGGGCTGAAACTGAGATTTCTGCCGATTTTATGAACAGTGTGGACAGTAGGGCAG AGGTACCAACCCGTGTGAATTTTGAGCCTCGAACTGAGCGGGAAGAAAATTTCCGTACCA CTGCGGGAAATGTTGCTAGAACAAATGGTATTCATGAGCACAATAATTTCCAGCAACCTC AGCACCGTATGCGAAATGTTCTAGCACCATCTGTATCAGAGGCATCAAGTGGCTGGACTG GGAGAGAGGGAGGCGTAGTCCCAGTTTGGTCGCCTCCTGCAGCATCAGACCATTCAGAAA CTTTTGCCTCTGATGAAGCTGACATTTCTAGTAGGAGTTATTTGGATAGGCATCCACAGT CGCACCGGTTGATGAACTGGAGTCAATTATCCCAGTCATTGTGAGTTCAGATGCACGGTA ACTGATTGGTCTCAGACAACAGGTCGGGAAGTGGAAAATTCCATGCAACCAAATTGGATC GGTTAGGGTTTTCTCCGCCCCAGATTCATATGTAAATTGTCCACCTATGTGCTTATCTAT AGTCTGATGAGCATGCAAGCCAGGCAATTTCCTGAGTGTGACAATAGTTGTGTAAATCTA ATCCTGTAGAACCTATTCTGTTGTAACAGCATTGTTAGAGTTGGCTGAAAGGGATATGTA ATATTGATCAGACAACGAGGGTTTTCCTAGTGTCACGCGTATAGTATTTTTAGGGGGAGT CTTGTCTATACCTGTACATTCCCTTGTGCTATTGGCAATCTATTATCACTACTTTTGTGT TGAA