Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0450200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:22433781:22434743:1 gene:Os04g0450200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os04t0450200-01)
Sequence

GAGTCCGATTTATCTGAGAATGACTACGGAATGCGCATTGACTTGATTACCAGAGTTTTT
GGTGCTAATGCAGCTGAAGATTTTTTTGAGAAACTTCCAGCTTGTGTGCAATCACTGGAA
GCATATACAGCTCTCCTACATTCTTATGCTCGATCCAAGATGACAGACAAAGCTGAGAGG
CTGTTTAAAAGAATGAAGGATGCCAACCTTTCCATGAATATCCTTGTTTACAATGAAATG
ATGACCCTGTACATTTCTGTTGGTGAGCTTGATAAAGTTCCGGTCATTGCTGAAGAGCTG
AAAAGGCAAAAATTTTCCCCAGACCTCTTCACATACAATCTCCGGATCAGCGCTTCTGCG
GCATCAATGGATCTGGAGGGCTTCAAAGGAATCCTTGATGAGATGTCAAAAGATCCAAAC
TCCAATGAAGGGTGGAAGCTGTACCAGAACCTCGCTGTGATTTACGTCGACGCTGGTCAG
CTTGTTGGTTCAGGAAACTCGCTGGTGGAAGCAGAGGCGAAGATCAGCCGGAGGGAGTGG
ATCACATACGATTTCCTCGTAATCTTACACACCGGGCTCGGCAACCGGGATAGAATCAAG
GACATTTGGAAATCCATGCTGATGACTTCACAGAGGATGACGAGTCGGAACTACATCTGC
GTGCTCTCATCCTACCTGATGTGCGGGCAGCTGAAGGATGCCGGGGAAGTCATCGACCAG
TGGCAGCGGTCGAAAGCCCCAGAGTTCGACATCTCTGCCTGCAATAGGCTGTTTGATGCC
TTCCTGAACGCCGGTTTCACCGACACGGCAAATAGCTTCAGGGAACTGATGCTGCAAAAG
AGCTGTATACTGACAAGCAGGCAAGAACGCTCTTCCTGA

Peptide Sequence

PEP ID

Os04t0450200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:22433781:22434743:1 gene:Os04g0450200 transcript:Os04t0450200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os04t0450200-01)
Sequence

ESDLSENDYGMRIDLITRVFGANAAEDFFEKLPACVQSLEAYTALLHSYARSKMTDKAER
LFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIAEELKRQKFSPDLFTYNLRISASA
ASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIYVDAGQLVGSGNSLVEAEAKISRREW
ITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTSRNYICVLSSYLMCGQLKDAGEVIDQ
WQRSKAPEFDISACNRLFDAFLNAGFTDTANSFRELMLQKSCILTSRQERSS

Transcript Sequence

Transcript ID

Os04t0450200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:22433781:22434743:1 gene:Os04g0450200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os04t0450200-01)
Sequence

ATGAGTCCGATTTATCTGAGAATGACTACGGAATGCGCATTGACTTGATTACCAGAGTTT
TTGGTGCTAATGCAGCTGAAGATTTTTTTGAGAAACTTCCAGCTTGTGTGCAATCACTGG
AAGCATATACAGCTCTCCTACATTCTTATGCTCGATCCAAGATGACAGACAAAGCTGAGA
GGCTGTTTAAAAGAATGAAGGATGCCAACCTTTCCATGAATATCCTTGTTTACAATGAAA
TGATGACCCTGTACATTTCTGTTGGTGAGCTTGATAAAGTTCCGGTCATTGCTGAAGAGC
TGAAAAGGCAAAAATTTTCCCCAGACCTCTTCACATACAATCTCCGGATCAGCGCTTCTG
CGGCATCAATGGATCTGGAGGGCTTCAAAGGAATCCTTGATGAGATGTCAAAAGATCCAA
ACTCCAATGAAGGGTGGAAGCTGTACCAGAACCTCGCTGTGATTTACGTCGACGCTGGTC
AGCTTGTTGGTTCAGGAAACTCGCTGGTGGAAGCAGAGGCGAAGATCAGCCGGAGGGAGT
GGATCACATACGATTTCCTCGTAATCTTACACACCGGGCTCGGCAACCGGGATAGAATCA
AGGACATTTGGAAATCCATGCTGATGACTTCACAGAGGATGACGAGTCGGAACTACATCT
GCGTGCTCTCATCCTACCTGATGTGCGGGCAGCTGAAGGATGCCGGGGAAGTCATCGACC
AGTGGCAGCGGTCGAAAGCCCCAGAGTTCGACATCTCTGCCTGCAATAGGCTGTTTGATG
CCTTCCTGAACGCCGGTTTCACCGACACGGCAAATAGCTTCAGGGAACTGATGCTGCAAA
AGAGCTGTATACTGACAAGCAGGCAAGAACGCTCTTCCTGAGTGGCCATCCATGCTGAAA
CTGTTGAGTAGGATTATGTCATTACATGATGCAATAATAATAGATACTTTCCAGTTGGTT
GCT