Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0450000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:22425447:22426564:1 gene:Os04g0450000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os04t0450000-01)
Sequence

ATGGCGTCGGCGTCGCCGAGTAGTAATTCGGTCGTAGGAGGGGCCGGCGCCGGCGCCGGC
GACGTGTGCTGCATGTGCGGCGACCGCGGCCTGCCGGAGGAGCTGTTCCGCTGCCGTCTC
TGCCGCGTCCGGCTGCAGCACAGGTATTGCAGCGATCTGTACCCGAGGGCGACGGCGTAC
AGGCGGTGCAACTGGTGCCTGGTCAGGGAGCCTGCTCCCGCCGCCGCCGCCGGAGCCGCC
GGCCATGTCCACGCGATGGTGGATAAGCCGACGACGGTGCGACGGAAGACGGCATCGTCG
TCGTCGCCGCCGCCGTCGTCGTCGATGACGGATCAGGAGACTTCGCCGACGACGATGTCC
AGTGAGGCAGAGCGGCAGCGGCGCCTGCAGGAGGCGGCCGGATGGTCGGCTTCCAGGAGG
GCGCCGGACACGGCCGGGCTCGGCCGGCCGGTCAAGAAGCAGAAGGCTGCCGCCGACGAC
GACGAGGGGGAGGAGGCTCCGGGCGCGAGAGCGGCGCCGGCGGCGAAGGGGAACAACGGC
GGCAACAAGGAGGAGATGCAAGCGGCGGGGAAGAAGACCGGGGTGAAGGTCAGGGTGAGG
AGGTACAAGCTCCTCGCCGAGGTCATCAGCTGCTAG

Peptide Sequence

PEP ID

Os04t0450000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:22425447:22426564:1 gene:Os04g0450000 transcript:Os04t0450000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os04t0450000-01)
Sequence

MASASPSSNSVVGGAGAGAGDVCCMCGDRGLPEELFRCRLCRVRLQHRYCSDLYPRATAY
RRCNWCLVREPAPAAAAGAAGHVHAMVDKPTTVRRKTASSSSPPPSSSMTDQETSPTTMS
SEAERQRRLQEAAGWSASRRAPDTAGLGRPVKKQKAAADDDEGEEAPGARAAPAAKGNNG
GNKEEMQAAGKKTGVKVRVRRYKLLAEVISC

Transcript Sequence

Transcript ID

Os04t0450000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:22425447:22426564:1 gene:Os04g0450000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os04t0450000-01)
Sequence

CTCTCGAACCACACGACGACAGAGACCAGACGCAGAAGATGTCGAGATCTCGATAGCTAG
CTAGCTTGTGCATGAGCATGACTCCTCACTGCTTATAGCTTAGCTTCCTATATAGCTCGA
TCGATCGATCACCAGGCCGTGCCGATCGGCGGCGTACTGATCATCGATCGATCGATCGAT
CCATGGCGTCGGCGTCGCCGAGTAGTAATTCGGTCGTAGGAGGGGCCGGCGCCGGCGCCG
GCGACGTGTGCTGCATGTGCGGCGACCGCGGCCTGCCGGAGGAGCTGTTCCGCTGCCGTC
TCTGCCGCGTCCGGCTGCAGCACAGGTATTGCAGCGATCTGTACCCGAGGGCGACGGCGT
ACAGGCGGTGCAACTGGTGCCTGGTCAGGGAGCCTGCTCCCGCCGCCGCCGCCGGAGCCG
CCGGCCATGTCCACGCGATGGTGGATAAGCCGACGACGGTGCGACGGAAGACGGCATCGT
CGTCGTCGCCGCCGCCGTCGTCGTCGATGACGGATCAGGAGACTTCGCCGACGACGATGT
CCAGTGAGGCAGAGCGGCAGCGGCGCCTGCAGGAGGCGGCCGGATGGTCGGCTTCCAGGA
GGGCGCCGGACACGGCCGGGCTCGGCCGGCCGGTCAAGAAGCAGAAGGCTGCCGCCGACG
ACGACGAGGGGGAGGAGGCTCCGGGCGCGAGAGCGGCGCCGGCGGCGAAGGGGAACAACG
GCGGCAACAAGGAGGAGATGCAAGCGGCGGGGAAGAAGACCGGGGTGAAGGTCAGGGTGA
GGAGGTACAAGCTCCTCGCCGAGGTCATCAGCTGCTAGAGCCAATTGCGGTTGCTACAAT
GTGTACAGTATGTGTACTGTATACACGTATCCGTCGTTATGCACGGCAAATAGTGTACAG
ATCTTGTGAGAAACCATAATCGAGTCGGAGCCCTCTTCTTACGCGGTTGTTTGTGTTGAA
TGATTGAAAAGCTATAATACCTATTCGAGAGTAT