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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0444900-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:22189044:22191821:1 gene:Os04g0444900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os04t0444900-01)
Sequence

ATGGACGGCGGCTACGGCTCGGTCACAATCGTCCACGACGCGCGCTCCCCCGAGGACGTC
TTCCAGGACTTCTGCGGCCGCCGCTCCGGCATCGTCAAGGCCCTCACCATCGAGGTGGAG
AAGTTCTACAAGCAGTGCGACCCTGAGAAGGAGAACTTGTGCCTCTATGGACTGCCTAAT
GGAACCTGGGCAGTGACTCTACCAGCTGATGAAGTTCCTCCTGAACTACCAGAGCCAGCC
CTCGGGATAAACTTCGCTCGTGATGGAATGCAGGAAAAAGATTGGCTGTCCCTGATAGCT
GTCCATAGTGATTCATGGTTACTGTCTGTGGCATTTTACTTTGGGGCTCGTTTTGGATTT
GATAAAAAGGCCAGGGAACGGCTCTTCATGATGACCAGTAGTCTCCCCACTGTCTTTGAA
GTTGTGTCAGGAGGTGTGAATACACAATCAAAAACCGCCAACGGCAGTAGCAAAAACAAG
TCAGGCTCTAAGCCACCAAAGCGGCCCAATTCTGACAGCAAGCCACAGAAGCAGGTCCAG
GCAAAGTATGAGGAAGAGAACGGCGGCAGAGGAAATGGAGGTGATGAAGATCAAGCTGAA
ACCATTTGTGGCGCCTGTGGTGAGGCCTACGCAAACGGCGAGTTCTGGATTTGCTGTGAC
ATTTGTGAGACCTGGTTCCATGGCAAATGTGTCCGAATCACCCCTGCCAAGGCGGAGCAC
ATCAAGCATTACAAGTGTCCTGGCTGCAGCAACAAGAGGACCAGAGAATGA

Peptide Sequence

PEP ID

Os04t0444900-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:22189044:22191821:1 gene:Os04g0444900 transcript:Os04t0444900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os04t0444900-01)
Sequence

MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN
GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF
DKKARERLFMMTSSLPTVFEVVSGGVNTQSKTANGSSKNKSGSKPPKRPNSDSKPQKQVQ
AKYEEENGGRGNGGDEDQAETICGACGEAYANGEFWICCDICETWFHGKCVRITPAKAEH
IKHYKCPGCSNKRTRE

Transcript Sequence

Transcript ID

Os04t0444900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:22189044:22191821:1 gene:Os04g0444900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Alfin-1. (Os04t0444900-01)
Sequence

AACCTCCGCTTCTAATCTCTCTCCTCCTCTCCGCGGCGCCACTCTCCTTCCGCCGCCGCC
GCCGACGACGACGACGACCTCCTCCTCCGGGTCGACGAAACCCTAGCCGCGGCGCGGAGG
CCTGCTGCTTCCGGCTCCCGCTCCTCCCTGCCGAGTTCCCGCGAACCCTTCGCTGCCGGT
GAAGGAAGGCGAGGATGGACGGCGGCTACGGCTCGGTCACAATCGTCCACGACGCGCGCT
CCCCCGAGGACGTCTTCCAGGACTTCTGCGGCCGCCGCTCCGGCATCGTCAAGGCCCTCA
CCATCGAGGTGGAGAAGTTCTACAAGCAGTGCGACCCTGAGAAGGAGAACTTGTGCCTCT
ATGGACTGCCTAATGGAACCTGGGCAGTGACTCTACCAGCTGATGAAGTTCCTCCTGAAC
TACCAGAGCCAGCCCTCGGGATAAACTTCGCTCGTGATGGAATGCAGGAAAAAGATTGGC
TGTCCCTGATAGCTGTCCATAGTGATTCATGGTTACTGTCTGTGGCATTTTACTTTGGGG
CTCGTTTTGGATTTGATAAAAAGGCCAGGGAACGGCTCTTCATGATGACCAGTAGTCTCC
CCACTGTCTTTGAAGTTGTGTCAGGAGGTGTGAATACACAATCAAAAACCGCCAACGGCA
GTAGCAAAAACAAGTCAGGCTCTAAGCCACCAAAGCGGCCCAATTCTGACAGCAAGCCAC
AGAAGCAGGTCCAGGCAAAGTATGAGGAAGAGAACGGCGGCAGAGGAAATGGAGGTGATG
AAGATCAAGCTGAAACCATTTGTGGCGCCTGTGGTGAGGCCTACGCAAACGGCGAGTTCT
GGATTTGCTGTGACATTTGTGAGACCTGGTTCCATGGCAAATGTGTCCGAATCACCCCTG
CCAAGGCGGAGCACATCAAGCATTACAAGTGTCCTGGCTGCAGCAACAAGAGGACCAGAG
AATGAGCGTCCATTTTTTCTTTCTAATGTGATCCTGATAGTAGTGGCAAAAAATAGATAG
TAGTTTACCCGTGAACTTGGGGAACCTCAATTCCTACTGGGTGACCGTCGTTGCGGCAGC
CCTGGTTGCCCCGCTGTATTAGTAGTAGCTACGTTACTTCTTGTATCATACTGGACATAG
TTGGTAGTGCCACAGTAATAGTAGTATCAATAGGCCATCTTCTGCCTCCTTGGTTGGATG
GATTGGTTAAGTGTCTAAACTCTCTGATTAATGATGTGATTTTTTAGTC