Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0442100-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:22014111:22017058:1 gene:Os04g0442100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Smr protein/MutS2 C-terminal domain containing protein. (Os04t0442100-01)
Sequence	ATGTATAGGCAGAAGATACCCAATTCTGGGTGGGCTGCTTTTGATCGCAGGTGGCGCAGC AAAGATGGAAGAGGGGATGACACCGATGTCAATTCATTTCCAGCTCTCTCAGATTATATA GCCCCCAGTGCTGCTAGTAGCTCAGTTGCGGAAAACAGTAGGCCAAAAGCAAAGCCTTTT GCATCAGTGCTTCGTCCTTCTGTTGATTGTGCAGCTGATGGTAATGAAAACGGAAATAAG CATTTCACTTGTCACAGGGAGAATGCAAACTATGGTCTAAAATCTGCATCTGAAAATAAA ATTGAGCTGCTGAGGGGTGCTCATAGTTGGGCCGACAGTAATTTAATTGAGGATGTACTG GCCTCTGTGAACAATGATGTTGGTGAAGCATCTGCTTTGTTGAAAGCTATGGCGTCTCCT TGTTTTCCAATAAGGGAGGATGGACTACCTGATCAGCTTTCTTCTGAGATTAATAAAACA CATGGTTTACCATCAGGAAATGGTACAGCAGAAAATAATCTTGTAAATGACTCGCAGTTG TTGCCTCTGCCAATGAATATGTCGTCTGTACCCATAGAACCGGAAGTGGAAGAGCTCGAT GACGATTACTTTAACCACAGGAAAGATGCATTGAAGATTATGAGGGCTGCCACGAAGCAT TCTCAGGCTGCGAGTAATGCTTTCTTGAGAGGTGACCATGCTGCTGCCAAGGAACTTTCC CTCAGAGCTCAAGAAGAGCGATCCGCTGCTGAAGAGCTGAACAAGAAGGCAGCAAAAGAA ATATTTCGCCTCAGGAACAGCAATAATAGCATTTGGAAGCTAGACATGCATGGTCTACAT GCATCAGAGGCTGTGGAAGTACTGGAACGGCATCTTCACAGGATAGAATTCCAGCCACCA GGGAATAATGCAGCTTCATCTGATGAAGTAGCTAGGTCTGAACCCAGAGTGTCTGGTCCA AGCATTGAGCCCGGCCCAGGGAAGGTGGTGTTTGTTCGTCCCATACAGGCTATCTTAGAG GTGATCACAGGGATTGGCAAGCACAGCAAAGGGCAGGCCTCACTACCTGTTGCAGTCAGG GGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGCTGCGGCCTGGTGTGTTCTCTGTT CGTCCTAAATTCCGTCGCCGGTGA

Peptide Sequence

PEP ID	Os04t0442100-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:22014111:22017058:1 gene:Os04g0442100 transcript:Os04t0442100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Smr protein/MutS2 C-terminal domain containing protein. (Os04t0442100-01)
Sequence	MYRQKIPNSGWAAFDRRWRSKDGRGDDTDVNSFPALSDYIAPSAASSSVAENSRPKAKPF ASVLRPSVDCAADGNENGNKHFTCHRENANYGLKSASENKIELLRGAHSWADSNLIEDVL ASVNNDVGEASALLKAMASPCFPIREDGLPDQLSSEINKTHGLPSGNGTAENNLVNDSQL LPLPMNMSSVPIEPEVEELDDDYFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELS LRAQEERSAAEELNKKAAKEIFRLRNSNNSIWKLDMHGLHASEAVEVLERHLHRIEFQPP GNNAASSDEVARSEPRVSGPSIEPGPGKVVFVRPIQAILEVITGIGKHSKGQASLPVAVR GFLIENGYRFDELRPGVFSVRPKFRRR

Transcript Sequence

Transcript ID	Os04t0442100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:22014111:22017058:1 gene:Os04g0442100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Smr protein/MutS2 C-terminal domain containing protein. (Os04t0442100-01)
Sequence	AGCCAGCCAAGCCACCTAATTAACCTAACTGTTCTCGTCCATATCTAACGACGGCCGCCT CCTCTTCCCCCTCGCCCAGCGCCGCCCCAGCGAAAGCAAAATCCCCTCCACGAACCGCGC GAAGAAAGTATTTCTCGCTCACCGGAATCCGCCGTGAACCGTGAGCAGTTGATGGGTTTC AGGGGAACCGCCGGCGCAGCACCCTCGTCCTCCCGCACGTCCGATCTGCCCCCTTCCACG CCGTGGTTCCGGGAGCTGTGGGGGGTCAACGCCGACAAATAGTAGCAGCCGCCGTCGCCG AAGGACAGCATTGGTGGATTTCTCGATTTGCTGATTGAATCAATTAAAGCAAAGGGAGGG GCGTCCCTTCAGCAAGAGTTGGGGGCTTATTTATTTCAGTCTGATAATAAGACTTCTTTA AGAAGACTGTGCCGACTGTAAATATGTATAGGCAGAAGATACCCAATTCTGGGTGGGCTG CTTTTGATCGCAGGTGGCGCAGCAAAGATGGAAGAGGGGATGACACCGATGTCAATTCAT TTCCAGCTCTCTCAGATTATATAGCCCCCAGTGCTGCTAGTAGCTCAGTTGCGGAAAACA GTAGGCCAAAAGCAAAGCCTTTTGCATCAGTGCTTCGTCCTTCTGTTGATTGTGCAGCTG ATGGTAATGAAAACGGAAATAAGCATTTCACTTGTCACAGGGAGAATGCAAACTATGGTC TAAAATCTGCATCTGAAAATAAAATTGAGCTGCTGAGGGGTGCTCATAGTTGGGCCGACA GTAATTTAATTGAGGATGTACTGGCCTCTGTGAACAATGATGTTGGTGAAGCATCTGCTT TGTTGAAAGCTATGGCGTCTCCTTGTTTTCCAATAAGGGAGGATGGACTACCTGATCAGC TTTCTTCTGAGATTAATAAAACACATGGTTTACCATCAGGAAATGGTACAGCAGAAAATA ATCTTGTAAATGACTCGCAGTTGTTGCCTCTGCCAATGAATATGTCGTCTGTACCCATAG AACCGGAAGTGGAAGAGCTCGATGACGATTACTTTAACCACAGGAAAGATGCATTGAAGA TTATGAGGGCTGCCACGAAGCATTCTCAGGCTGCGAGTAATGCTTTCTTGAGAGGTGACC ATGCTGCTGCCAAGGAACTTTCCCTCAGAGCTCAAGAAGAGCGATCCGCTGCTGAAGAGC TGAACAAGAAGGCAGCAAAAGAAATATTTCGCCTCAGGAACAGCAATAATAGCATTTGGA AGCTAGACATGCATGGTCTACATGCATCAGAGGCTGTGGAAGTACTGGAACGGCATCTTC ACAGGATAGAATTCCAGCCACCAGGGAATAATGCAGCTTCATCTGATGAAGTAGCTAGGT CTGAACCCAGAGTGTCTGGTCCAAGCATTGAGCCCGGCCCAGGGAAGGTGGTGTTTGTTC GTCCCATACAGGCTATCTTAGAGGTGATCACAGGGATTGGCAAGCACAGCAAAGGGCAGG CCTCACTACCTGTTGCAGTCAGGGGCTTCCTCATTGAAAATGGGTACCGATTTGATGAGC TGCGGCCTGGTGTGTTCTCTGTTCGTCCTAAATTCCGTCGCCGGTGAACCTGTGGAAGTG TGTACTGTACCGCCAAATGGAGCATTACGCTTTGTGGCATGTCATAGTTTATTTACTTTG AAATTGAATGTAACATGCAATAGTTTATTTACGTTGAAATTGAATGTAACCATTTGTAAA ATGCTCAAGTTGTTTATCTAAAACAGAAAGCCAATTCAATTCTGTAACCATACGAATCGG C