Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0441900-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:21989599:21995086:-1 gene:Os04g0441900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleft lip and palate transmembrane 1 family protein. (Os04t0441900-01);Similar to transmembrane CLPTM1 family protein. (Os04t0441900-02);Similar to predicted protein. (Os04t0441900-03)
Sequence

ATGTCGCAGCCGGCGGCGGTGGCCGCTGGGGCGGCGGCGGGGCAGCAGCCGCAGGGCCGG
GCGCAGGCGGCGAGGCAGGCGGGCGGCGGACTGGGGCAGACCATCGCCGGGATCGTGCGG
ATGGCCGTGTTCTGGTACTTCGCCGCCAAGTTCTTCGGCCCGAAGCGGCCCCCGGCGGAG
CCGGGCATGCTCATGTCCAACCTCTTCCAGAAGGGAGAGCCGCTGGATATGTGGATGTAT
TTATCAGAAAATGAGAAATTCAATGACTTCAGTAATGAGGATGCACTCGTCTGGCATGAG
GCAAACATACCATATGCAGTCTGGGGACCTACCAGTACGAGAACGCACACATTGACATAC
TATCCTTCTGAGGCTATCAAGAACAATGGTTCTTTGTATGCTCATGTTTATTTTGCCCGC
TCGGGTTACCCTGTGGATCCTACTGATCCTGAATATGAGCAAAGTTCTGCATTTGGCAGG
ACACACCCTGTTGTGGCTTACTTGCGAAAACCAAAAGATGGTAAAAAGAAGAGCTTGCTG
GGAGATTCAAGTGAATCTAATGAACAACCACCACCTAAGGAGAATAAAGATTCTGTAGAC
AAAGATGAGGGCCCAGTTGAATATATTTCTTATTGGAAACCAAATGTAACAATAAATCTT
GTTGACGACTTCACACGGTATCCACACAATAATGTTCCACCCAATGTTGCTCCATATTTG
AATGTTGATCCATCTTCAAACAACTACTACCCAACTGTATTCTTCAATGAGTTTTGGCTA
CTGAGAGATAAATTGATAGCACTCAATGAGACTGTGGAGGAACTGCCTTTGAACCTTGAA
GTTGGTCCTATTAGCATGACCAAGTGGCAAATATTTCTTCAGATGGAGCAGTCCTTCCAA
GTTCATCGCAGTTATGGAAGTATGCTTGAAGGGGAGGCTGATGAGCTCAAGAGAGTTTTC
CTTGAAGGAAATCCATACTTTTTGGGATTGACCATGATTGTTTCTCTGTTCCACTCTCTG
TTTGATTTTCTGGCTTTCAAAAATGATATTCAGTTCTGGAATAAGAACAAGTCCATGGAA
GGTCTATCAGCAAAATCCGTGGTTCTGAACTTTGTATGCCAGCTGATTATTTTCCTCTAC
CTGCTCGACAATGAGACTTCATGGATGATCCTTGGTAGCTCTGGAATTGGTGTTTGCATT
GAATTTTGGAAGATTGGAAAAGCAATGCATGTTGAGATCGATAGAAGTGGAAAGATTCCC
ATGTTGAGGTTCCGGGACCGTGAATCATATGCACAGAATAAGACAAAGGAGTATGACGCA
ATTGCAATGAAGTATCTTACATATGTACTTCTCTTCCTTGTGTTCTGTTTCTCCATCTAT
TCCCTTAAGTATGAGAAACACAAGAGCTGGTACTCATGGATACTCTCTTCTCTCACAAGT
TGTGTGTACATGTTTGGTTTCATCATGATGTGCCCACAACTATTCATCAACTACAAGCTG
AAGTCTGTTGCTCATATGCCATGGAGGCAAATGACCTACAAGTTCCTCAACACCATAATT
GATGACCTTTTCGCATTTGTGATCAAAATGCCGATGCTGCATCGTCTCTCAGTTTTCAGA
GATGATGTTATCTTCTTGATATACCTCTACCAGAGATGGGTGTACCCAGTTGACAAGAAG
CGTGTCAACGAGTACGGCTTCGGTGGGGAAGACGAGCCACAAGCTCCCCAGACATTGGAA
GGGAGCGATCTAGCAGCTGCATCCCAGCAAGCCGGGGCTGAGGCGGAGGCCGAGACGAGC
ACGGAGGACAAGAAGACGAAGTGA

Peptide Sequence

PEP ID

Os04t0441900-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:21989599:21995086:-1 gene:Os04g0441900 transcript:Os04t0441900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleft lip and palate transmembrane 1 family protein. (Os04t0441900-01);Similar to transmembrane CLPTM1 family protein. (Os04t0441900-02);Similar to predicted protein. (Os04t0441900-03)
Sequence

MSQPAAVAAGAAAGQQPQGRAQAARQAGGGLGQTIAGIVRMAVFWYFAAKFFGPKRPPAE
PGMLMSNLFQKGEPLDMWMYLSENEKFNDFSNEDALVWHEANIPYAVWGPTSTRTHTLTY
YPSEAIKNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTHPVVAYLRKPKDGKKKSLL
GDSSESNEQPPPKENKDSVDKDEGPVEYISYWKPNVTINLVDDFTRYPHNNVPPNVAPYL
NVDPSSNNYYPTVFFNEFWLLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQMEQSFQ
VHRSYGSMLEGEADELKRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSME
GLSAKSVVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIP
MLRFRDRESYAQNKTKEYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTS
CVYMFGFIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFR
DDVIFLIYLYQRWVYPVDKKRVNEYGFGGEDEPQAPQTLEGSDLAAASQQAGAEAEAETS
TEDKKTK

Transcript Sequence

Transcript ID

Os04t0441900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:21989599:21995086:-1 gene:Os04g0441900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cleft lip and palate transmembrane 1 family protein. (Os04t0441900-01);Similar to transmembrane CLPTM1 family protein. (Os04t0441900-02);Similar to predicted protein. (Os04t0441900-03)
Sequence

GGTGAAAAAAAAAAGCCTTCGCATCTAGCGCCGCCTCTCTCCACCTCCCTCGTTTCGATC
TAGCTCGCCGGCGGCGATGTCGCAGCCGGCGGCGGTGGCCGCTGGGGCGGCGGCGGGGCA
GCAGCCGCAGGGCCGGGCGCAGGCGGCGAGGCAGGCGGGCGGCGGACTGGGGCAGACCAT
CGCCGGGATCGTGCGGATGGCCGTGTTCTGGTACTTCGCCGCCAAGTTCTTCGGCCCGAA
GCGGCCCCCGGCGGAGCCGGGCATGCTCATGTCCAACCTCTTCCAGAAGGGAGAGCCGCT
GGATATGTGGATGTATTTATCAGAAAATGAGAAATTCAATGACTTCAGTAATGAGGATGC
ACTCGTCTGGCATGAGGCAAACATACCATATGCAGTCTGGGGACCTACCAGTACGAGAAC
GCACACATTGACATACTATCCTTCTGAGGCTATCAAGAACAATGGTTCTTTGTATGCTCA
TGTTTATTTTGCCCGCTCGGGTTACCCTGTGGATCCTACTGATCCTGAATATGAGCAAAG
TTCTGCATTTGGCAGGACACACCCTGTTGTGGCTTACTTGCGAAAACCAAAAGATGGTAA
AAAGAAGAGCTTGCTGGGAGATTCAAGTGAATCTAATGAACAACCACCACCTAAGGAGAA
TAAAGATTCTGTAGACAAAGATGAGGGCCCAGTTGAATATATTTCTTATTGGAAACCAAA
TGTAACAATAAATCTTGTTGACGACTTCACACGGTATCCACACAATAATGTTCCACCCAA
TGTTGCTCCATATTTGAATGTTGATCCATCTTCAAACAACTACTACCCAACTGTATTCTT
CAATGAGTTTTGGCTACTGAGAGATAAATTGATAGCACTCAATGAGACTGTGGAGGAACT
GCCTTTGAACCTTGAAGTTGGTCCTATTAGCATGACCAAGTGGCAAATATTTCTTCAGAT
GGAGCAGTCCTTCCAAGTTCATCGCAGTTATGGAAGTATGCTTGAAGGGGAGGCTGATGA
GCTCAAGAGAGTTTTCCTTGAAGGAAATCCATACTTTTTGGGATTGACCATGATTGTTTC
TCTGTTCCACTCTCTGTTTGATTTTCTGGCTTTCAAAAATGATATTCAGTTCTGGAATAA
GAACAAGTCCATGGAAGGTCTATCAGCAAAATCCGTGGTTCTGAACTTTGTATGCCAGCT
GATTATTTTCCTCTACCTGCTCGACAATGAGACTTCATGGATGATCCTTGGTAGCTCTGG
AATTGGTGTTTGCATTGAATTTTGGAAGATTGGAAAAGCAATGCATGTTGAGATCGATAG
AAGTGGAAAGATTCCCATGTTGAGGTTCCGGGACCGTGAATCATATGCACAGAATAAGAC
AAAGGAGTATGACGCAATTGCAATGAAGTATCTTACATATGTACTTCTCTTCCTTGTGTT
CTGTTTCTCCATCTATTCCCTTAAGTATGAGAAACACAAGAGCTGGTACTCATGGATACT
CTCTTCTCTCACAAGTTGTGTGTACATGTTTGGTTTCATCATGATGTGCCCACAACTATT
CATCAACTACAAGCTGAAGTCTGTTGCTCATATGCCATGGAGGCAAATGACCTACAAGTT
CCTCAACACCATAATTGATGACCTTTTCGCATTTGTGATCAAAATGCCGATGCTGCATCG
TCTCTCAGTTTTCAGAGATGATGTTATCTTCTTGATATACCTCTACCAGAGATGGGTGTA
CCCAGTTGACAAGAAGCGTGTCAACGAGTACGGCTTCGGTGGGGAAGACGAGCCACAAGC
TCCCCAGACATTGGAAGGGAGCGATCTAGCAGCTGCATCCCAGCAAGCCGGGGCTGAGGC
GGAGGCCGAGACGAGCACGGAGGACAAGAAGACGAAGTGAGCCCCTCCTGCTCTGCACCT
CCAGATCATCCAACCACAGAACACATCTCGGCTGCCACCGGGCGTAAATTTTCTGTGCCG
AGCTTGGAACGCTGGACTCGCCTCACCCGTCGCTGAATGCTGCTGACCATAAGAGATTGT
AGTAACAGGCTTTGAGTGGGCGCATCGACGAACACACATACACTTGCCCAATCTATGGAC
GGGCAACATCGTCAAACATTATCGCCACTATTTCCCAGTTTGTCTTAATCTTTTTTTAGG
TAACAACAACCACCACCATTACCAGATGTCGATAACGATGCACTAGACGCGTATTTTATT
GGTTTATGTATAAGTTTTGCATTGGCTGAAAAAAAAGTGTTCGTTTATTG