Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0440100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:21897102:21904737:-1 gene:Os04g0440100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Nonsense-mediated decay UPF3 description:Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H0525C06.10 protein. (Os04t0440100-02)
Sequence

ATGGCGGCGGCGCGCGCGCACGTGAAGGACCCGGCGCACCGGACCAAGGTGGTGCTCCGG
AGGCTGCCGCCGGCGATCGCGCAGCAGGCCGTCGTGGAACAGGTCGACGCGCGCTTCGGC
GGCCGGTACGACTGGTCGTGCTTCCGCCCCGGCAATGCCAGCCAAAAGAATCACAGATAT
TCTCGACTCTACCTTAACTTCAAGGGCCCAGAAGATGTCGTTGAATTTGCTGAGGTCTTC
AATGGTCATGTGTTTGTGAATGAAAAGGGTGCTCAATTTAAAGCTCTTGTGGAATATGCA
CCATCGCAACAGGTCCCCAAGTCAAACACGAAGAAAGATGCTCGTCAAGGAACTATAATG
AAAGATCCGGAATACTTGGAGTTTCTTGAATCGATTTCAAAGCCTGCTGAGCATCTGCCA
AGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGCTGCTGGAAAGGAACCA
CCTGTTGTGACGCCTCTTATGGTCTATGTTCGCCAGCAAAGGGCAGCTAAGAGTATGGCT
CAGAGATCTGGAAGTAGTAGACTCAGTAGAAAAGTTGCGGGTGTTGTTACTAGCAGTCCT
AGTCCTTCTAAAAGGGGTTCTGAGAAGCGCAGGACCTCTGCTTCGACGCAATATGTTCTA
CGAGAGAATGCTAAGGAGAAGCCAACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCG
CAGAGGGAAAAAGATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAAC
AAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATACATCTGAT
GTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTGCACAATCTAGTTCTAGG
CAAGATCCGCGGCTTGAGGGCAGTGGCAGAATTATTAAGACTATACTTTCAAACAAGGAA
GGACGGCATGTGGTTACGTCTCAACATGATCAGGAAGGTCACATAATTACAGCTGAGAAG
CGCCCACCACGGATTCCAAACCCACGTTCCGTTGTTAAAGATCAGGTAGTTGAAAATGCT
GAGAAAAACCATTTGGATGACAAACATAGTCATCTCCATGGTTCTGGGCTCATCAGTGAA
AAGACTGAAAGACATGCTAGAAATAGAGATAGGCCTGATCGTGGTGTATGGGCCCCTCGT
CGCTATGACAAATCTGCATCAGGTGGGACGCATTCCTCGTCATCTGAGTTCTCACCAATG
CAGCAACATTCTGGTGAAAATTTCTGTCAGCAAGCAGATGGCCATGGAGAGAGAAAAATA
GACCCAAGGGGTCATGGTGGTATTCGCGGAGGCCCTGTGGAAAATGGACATAGACATGCT
AACCGCCGTGGTCCTCCACGTGGTCTGAAGGAGATGGAAATTTCTGCAAGCACATCTGAT
GGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGAGGCAAGTGTGGGTT
CAAAAATCAAGCTCGGCGACGTGA

Peptide Sequence

PEP ID

Os04t0440100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:21897102:21904737:-1 gene:Os04g0440100 transcript:Os04t0440100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Nonsense-mediated decay UPF3 description:Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H0525C06.10 protein. (Os04t0440100-02)
Sequence

MAAARAHVKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRY
SRLYLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIM
KDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMA
QRSGSSRLSRKVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENAKEKPTYILVPKRDEHA
QREKDATSGGISGSAHVAENKKEKIVLLKGRARVDSNTSDVTSQQQSGTPMKNAAQSSSR
QDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHIITAEKRPPRIPNPRSVVKDQVVENA
EKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPM
QQHSGENFCQQADGHGERKIDPRGHGGIRGGPVENGHRHANRRGPPRGLKEMEISASTSD
GKPSKRASANYGAHERQVWVQKSSSAT

Transcript Sequence

Transcript ID

Os04t0440100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:21897102:21904737:-1 gene:Os04g0440100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Nonsense-mediated decay UPF3 description:Similar to H0525C06.10 protein. (Os04t0440100-01);Similar to H0525C06.10 protein. (Os04t0440100-02)
Sequence

CTTCCCCCAATCTCCGACAGTTGCCAAATTTCCCTTCCCACCCCCAAACCCAAACCCCAG
CGACGACGGCGACGACGCGCAGCAGACGAAAGCGAGCGAGAGGCGAGAGAAATCCCATCG
TTTCCCAAACCCTAACCCCCTCCTCCTCCTCCTCCAGATCTCGGCGGCCGCGCGGCTGAT
GCGAGGTGAGCCCCGTCCGCCCTAGGGTTTGCGGCGGGGTGCGTGGTGGTGGTGGTTGGG
CCGGGGGGGACGGGGCCCTCCTGCTCGCGGGGGTGGGGGTTGGGTGGGGATGGCGGCGGC
GCGCGCGCACGTGAAGGACCCGGCGCACCGGACCAAGGTGGTGCTCCGGAGGCTGCCGCC
GGCGATCGCGCAGCAGGCCGTCGTGGAACAGGTCGACGCGCGCTTCGGCGGCCGGTACGA
CTGGTCGTGCTTCCGCCCCGGCAATGCCAGCCAAAAGAATCACAGATATTCTCGACTCTA
CCTTAACTTCAAGGGCCCAGAAGATGTCGTTGAATTTGCTGAGGTCTTCAATGGTCATGT
GTTTGTGAATGAAAAGGGTGCTCAATTTAAAGCTCTTGTGGAATATGCACCATCGCAACA
GGTCCCCAAGTCAAACACGAAGAAAGATGCTCGTCAAGGAACTATAATGAAAGATCCGGA
ATACTTGGAGTTTCTTGAATCGATTTCAAAGCCTGCTGAGCATCTGCCAAGTGCTGAAAT
TCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGCTGCTGGAAAGGAACCACCTGTTGTGAC
GCCTCTTATGGTCTATGTTCGCCAGCAAAGGGCAGCTAAGAGTATGGCTCAGAGATCTGG
AAGTAGTAGACTCAGTAGAAAAGTTGCGGGTGTTGTTACTAGCAGTCCTAGTCCTTCTAA
AAGGGGTTCTGAGAAGCGCAGGACCTCTGCTTCGACGCAATATGTTCTACGAGAGAATGC
TAAGGAGAAGCCAACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAA
AGATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAA
AATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATACATCTGATGTCACATCTCA
GCAGCAGTCAGGGACCCCTATGAAAAATGCTGCACAATCTAGTTCTAGGCAAGATCCGCG
GCTTGAGGGCAGTGGCAGAATTATTAAGACTATACTTTCAAACAAGGAAGGACGGCATGT
GGTTACGTCTCAACATGATCAGGAAGGTCACATAATTACAGCTGAGAAGCGCCCACCACG
GATTCCAAACCCACGTTCCGTTGTTAAAGATCAGGTAGTTGAAAATGCTGAGAAAAACCA
TTTGGATGACAAACATAGTCATCTCCATGGTTCTGGGCTCATCAGTGAAAAGACTGAAAG
ACATGCTAGAAATAGAGATAGGCCTGATCGTGGTGTATGGGCCCCTCGTCGCTATGACAA
ATCTGCATCAGGTGGGACGCATTCCTCGTCATCTGAGTTCTCACCAATGCAGCAACATTC
TGGTGAAAATTTCTGTCAGCAAGCAGATGGCCATGGAGAGAGAAAAATAGACCCAAGGGG
TCATGGTGGTATTCGCGGAGGCCCTGTGGAAAATGGACATAGACATGCTAACCGCCGTGG
TCCTCCACGTGGTCTGAAGGAGATGGAAATTTCTGCAAGCACATCTGATGGAAAGCCTTC
AAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGAGGCAAGTGTGGGTTCAAAAATCAAG
CTCGGCGACGTGATCTTGTCCAATGATGATACTCATCAAAACAAATATTGCAAGTTGTGG
AGTTCTGGATTTTGCAGCTTGATCCTGTGAAGTACTGTTAACAAAATGCCCCCGATCATA
TGCTTCCATGAAGTGCAATCTCAGATTTGTCAATCGAAATCTCAGCTTTAGCTGAAAAGG
GAGCTTATATGATTTGATTCACAGCAATAGTGAATTAACATAACCCACTTTAGGTAGCTC
TTGATTGCTTTGGGTGAGACTTGATTTGGGCCCAAGGTTGCTATTCTGGAGCAATGGAAG
GATTTAGGTTGGCATCATTACCCTCGTGACAGTGGTCACATATTTCTGAGACCCCTGGAG
AATATACACGACCTCAACTAATCAGAGATGGGTGTACATATCTCTAGAGAAAGAAGAGGT
CTGGTTCTGACTTCTGTTCGCAGGTTAGCGGTGCCATGTATCTACAAAAGAGATAAAAAA
AAGTTATCAGACTGCCTGGTTTGCTAAATAAAAGTGAATTAGTTGATAGATTATGAGAAT
CCACTGTTTAGGCGGCTGCGACCGTGGTCACCAACAGAAGTTACCCTAGAGTGCAAAGTG
GCATCTCATTTTGGTTTTGTGCCCCTGCCCCCCCTGAGTAACGGGATGTGGTATTGTTTT
GACATGTGGATGTTGATGGTGTGCGTCTTCCTGTTAATGTTTCACCAGATAATTATGGGG
GTATTGTTAAGAATGATGATATGATGTACAGCATCAAAGGTGCTTGCTGTTTTAATCTTG
AGCAAGTTGTCGTGCTTCTATG