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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0440000-03
CDS Infomation

cds chromosome:IRGSP-1.0:4:21893373:21895793:-1 gene:Os04g0440000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF2040, coiled-coil domain containing protein. (Os04t0440000-01);Similar to H0525C06.9 protein. (Os04t0440000-03)
Sequence

GACATGAAGCAGAAGGCCGCCCTCCCCAAGATGCAGGACAGGGTAGTTCGCGAGTCAAAA
TACATTGCGGCACTTAAGGAGAAAGCCGAACAACGTAAACGAGAGCAGGACATTATTTAT
GAGAGGAAGCTTCAAAAAGAGAGGAGTAAGGAAGACCACCTATATGGTGACAAAGACAAA
TTTGTTACATCTGCCTACAGGAAGAAACTTGAGGAGGAGCGGAAATGGCTGGAGGAAGAG
AAGCGGCGGCAGCTTCAAGAAGAAAAGGAAGATGTTACTAAGAAGAAAGACTTGAGTGAT
TTTTACTTTGGTCTTAGTAAGAATGTTGCTTTCGGTGCACAGACACATGACAATACAAAA
CATGCTAAACCTGAAAAGTTAGACGAGAAAGTTCAAGATGCTAAAACTAGCAAGGTTGGT
GCTGAAGTATCCGATCGCTCTCCTAAGCACAAAAGGGACTCCGGTGAAGGAGCAGAGACG
GCCAATGAAAGTAGAAGTGTGGAAGAACCTGCTACAACTCAATCAAGGGATTCAGCTGCT
GCTAGATCTACCGAGAAAAATGCAGATGTTTCCTTGGATGCTCCTCAGACCCAGACACCA
GAAAATACCCAACCAGCTCCTCAGACCCAGAATCCACAGAATACTCAACCAGCACAGATC
ACGGATGAACACTATAAGAGAAATGCTGATGCACTTGCTGCTGCCAGAGAAAGAGCTCTG
GCGCGGAAGAAAGCCAAAGCGCAGCAGATATGA

Peptide Sequence

PEP ID

Os04t0440000-03
PEP Infomation

pep chromosome:IRGSP-1.0:4:21893373:21895793:-1 gene:Os04g0440000 transcript:Os04t0440000-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF2040, coiled-coil domain containing protein. (Os04t0440000-01);Similar to H0525C06.9 protein. (Os04t0440000-03)
Sequence

DMKQKAALPKMQDRVVRESKYIAALKEKAEQRKREQDIIYERKLQKERSKEDHLYGDKDK
FVTSAYRKKLEEERKWLEEEKRRQLQEEKEDVTKKKDLSDFYFGLSKNVAFGAQTHDNTK
HAKPEKLDEKVQDAKTSKVGAEVSDRSPKHKRDSGEGAETANESRSVEEPATTQSRDSAA
ARSTEKNADVSLDAPQTQTPENTQPAPQTQNPQNTQPAQITDEHYKRNADALAAARERAL
ARKKAKAQQI

Transcript Sequence

Transcript ID

Os04t0440000-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:21893373:21895793:-1 gene:Os04g0440000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF2040, coiled-coil domain containing protein. (Os04t0440000-01);Similar to H0525C06.9 protein. (Os04t0440000-03)
Sequence

CGACATGAAGCAGAAGGCCGCCCTCCCCAAGATGCAGGACAGGGTAGTTCGCGAGTCAAA
ATACATTGCGGCACTTAAGGAGAAAGCCGAACAACGTAAACGAGAGCAGGACATTATTTA
TGAGAGGAAGCTTCAAAAAGAGAGGAGTAAGGAAGACCACCTATATGGTGACAAAGACAA
ATTTGTTACATCTGCCTACAGGAAGAAACTTGAGGAGGAGCGGAAATGGCTGGAGGAAGA
GAAGCGGCGGCAGCTTCAAGAAGAAAAGGAAGATGTTACTAAGAAGAAAGACTTGAGTGA
TTTTTACTTTGGTCTTAGTAAGAATGTTGCTTTCGGTGCACAGACACATGACAATACAAA
ACATGCTAAACCTGAAAAGTTAGACGAGAAAGTTCAAGATGCTAAAACTAGCAAGGTTGG
TGCTGAAGTATCCGATCGCTCTCCTAAGCACAAAAGGGACTCCGGTGAAGGAGCAGAGAC
GGCCAATGAAAGTAGAAGTGTGGAAGAACCTGCTACAACTCAATCAAGGGATTCAGCTGC
TGCTAGATCTACCGAGAAAAATGCAGATGTTTCCTTGGATGCTCCTCAGACCCAGACACC
AGAAAATACCCAACCAGCTCCTCAGACCCAGAATCCACAGAATACTCAACCAGCACAGAT
CACGGATGAACACTATAAGAGAAATGCTGATGCACTTGCTGCTGCCAGAGAAAGAGCTCT
GGCGCGGAAGAAAGCCAAAGCGCAGCAGATATGAAGTACGAGGCAGAGATACTCACCGAG
TTTTTTCTTATAGGCTAAGGTCATCATATTCTTGTTTGAGGTTTCGGGAAGACTGTAAAA
TGATGGATGGTTTCACCCTTCTAGCATTTCCAGGAGATAATCCCCTTGGTTTGATCTGCA
TGATGCTCTACCTTGCTTGATCAAAATATATGTGCAGGCAACCCTTCAACGTTAGAATAT
CTCGTTCGGCTTTTCTGAACATTTGTTCTGCTGTAAGATGGGAAATAACTTAGCACAGTG
AACTGAAGGTTGTATGCATATGTTCTCATTCATGTATACCGTTGTACTTTTGTAACTTGA
GTGATTGAACGCGATATGATTTCTGCAATGGCACAAATTACTACT