Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0435700-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:21682613:21688122:1 gene:Os04g0435700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os04t0435700-01)
Sequence

ATGGACGCGGTCATGTCCGCCGCCGACGACGCGGGCGCGGCGTCCGGCCGGGAGGACCCA
CCGCCAGCCGTGGTGCTCGTCTCCGCCGGCGCCAGCCACTCCGTCGCGCTCCTCGCGGGC
AATGTGCTGTGCTCGTGGGGGAGAGGGGAGGACGGGCAGCTCGGGCACGGGGACGCGGAG
GACCGGCTGGTGCCGACGGTGCTGAGCGGCTTCGACGCCGCCGCGCCGGGGATCACGTCG
GTCATCTGCGGCGCCGACCACACCACCGCCTACTCCGAGGACGAGCAGCAGGTGTACAGC
TGGGGCTGGGGAGACTTCGGGAGGCTCGGCCATGGCAACTCCAGCGACGTGTTCACTCCT
CAGCCAGTCAAGGCCCTGCAGGGGATAAAGATCAAGCAGATAGCTTGCGGCGATAGCCAT
TGTCTTGCCGTCACTATGGCAGGTGAAGTGCAAAGTTGGGGGCGCAACCAAAACGGACAG
CTTGGTCTTGGAACCACTGAAGACTCATTGCTCCCACAAAAGATTCAATCTTTTGAGGGA
GTTTGTGTGAAAATGATTGCTGCTGGTGCTGAACATACCGCTGCAGTAACTGAAGATGGT
GACCTCTATGGATGGGGCTGGGGTCGATATGGAAACTTGGGGCTTGGTGATCGCAATGAT
CGGTTGGTACCTGAGAAAGTATCTTCTGTGGAGGGAGAGAAGATGGTGCTTATTGCATGT
GGATGGCGCCATACAATTACTGTTTCTTCCTCTGGTAGTTTGTATACTTATGGTTGGAGC
AAATATGGTCAACTAGGGCATGGTGATTTTGAAGATCATTTAGTTCCACATAAACTAGAG
GCCTTAAAGGATAGCTCTATATCGCAGATTTCAGGTGGATGGAGGCATACAATGGCGCTT
ACATCAGATGGAAAGCTTTATGGTTGGGGGTGGAACAAGTTTGGGCAAGTCGGAGTTGGT
GATACTGATGATCACTGTTTCCCAGTACAGGTCAAGTTTCCAGAGGATCAGAAAGTTGCC
CAAGTTGCTTGCGGGTGGAGGCATACTCTTGCATTTACAGAAAAGAAAAATGTTTTCTCA
TGGGGGAGGGGTACTAGCGGACAACTTGGTCATGGTGAAATAGTTGACAGGAACAAACCT
GTGATGATTGATGCCTTAAGCCCGGATGGTCCTGGCTGCAAGAAATTAGAGCCATCAACA
GCTGTACCATTTGCAGCCAAAGTCTGGGTCTCGCCATCAGAAAGATATGCCATTGTTCCT
GATGAAAAAGTTCCAAATTCAGGTGAAGGCACGGCACGAGGCAACGGGGCGGACGCAAAT
GTACCAGAGAACGATGTAAAGAGGATGCGTGTGCATTCGTAG

Peptide Sequence

PEP ID

Os04t0435700-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:21682613:21688122:1 gene:Os04g0435700 transcript:Os04t0435700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os04t0435700-01)
Sequence

MDAVMSAADDAGAASGREDPPPAVVLVSAGASHSVALLAGNVLCSWGRGEDGQLGHGDAE
DRLVPTVLSGFDAAAPGITSVICGADHTTAYSEDEQQVYSWGWGDFGRLGHGNSSDVFTP
QPVKALQGIKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQSFEG
VCVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLVPEKVSSVEGEKMVLIAC
GWRHTITVSSSGSLYTYGWSKYGQLGHGDFEDHLVPHKLEALKDSSISQISGGWRHTMAL
TSDGKLYGWGWNKFGQVGVGDTDDHCFPVQVKFPEDQKVAQVACGWRHTLAFTEKKNVFS
WGRGTSGQLGHGEIVDRNKPVMIDALSPDGPGCKKLEPSTAVPFAAKVWVSPSERYAIVP
DEKVPNSGEGTARGNGADANVPENDVKRMRVHS

Transcript Sequence

Transcript ID

Os04t0435700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:21682613:21688122:1 gene:Os04g0435700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os04t0435700-01)
Sequence

ACCGGGCTTAAGCCGCTGGGGGCGGAGAGGCAGGCAGGCAGGCAGTGCGCCATTAGCGTC
ACATGGGGTGGGCTCTTGTACACTAGCCATTAATACGGCAGGTCGCCCATCCCATCGCGT
CTCCTCCGCTTAAATCCCCGCGGCTCCCTCCTGTCCGTGGTTGCAGCTCGCTCGCCGCGC
TAGAGCTTAGCTCCGCCGCCGCCGCCGCCGCCATCGCCGGTCGAGCTAGCTCTTTTTGGT
AGTGTAGCTAAGGCTAGCAAGAGGCCGGGAGCGCGGGTGGTGTGGCCGCGGATTATCTGG
GTGCTTGCTTGTGCCTCCGGATCGGCCGGGGGTGATCGAGGCATGGACGCGGTCATGTCC
GCCGCCGACGACGCGGGCGCGGCGTCCGGCCGGGAGGACCCACCGCCAGCCGTGGTGCTC
GTCTCCGCCGGCGCCAGCCACTCCGTCGCGCTCCTCGCGGGCAATGTGCTGTGCTCGTGG
GGGAGAGGGGAGGACGGGCAGCTCGGGCACGGGGACGCGGAGGACCGGCTGGTGCCGACG
GTGCTGAGCGGCTTCGACGCCGCCGCGCCGGGGATCACGTCGGTCATCTGCGGCGCCGAC
CACACCACCGCCTACTCCGAGGACGAGCAGCAGGTGTACAGCTGGGGCTGGGGAGACTTC
GGGAGGCTCGGCCATGGCAACTCCAGCGACGTGTTCACTCCTCAGCCAGTCAAGGCCCTG
CAGGGGATAAAGATCAAGCAGATAGCTTGCGGCGATAGCCATTGTCTTGCCGTCACTATG
GCAGGTGAAGTGCAAAGTTGGGGGCGCAACCAAAACGGACAGCTTGGTCTTGGAACCACT
GAAGACTCATTGCTCCCACAAAAGATTCAATCTTTTGAGGGAGTTTGTGTGAAAATGATT
GCTGCTGGTGCTGAACATACCGCTGCAGTAACTGAAGATGGTGACCTCTATGGATGGGGC
TGGGGTCGATATGGAAACTTGGGGCTTGGTGATCGCAATGATCGGTTGGTACCTGAGAAA
GTATCTTCTGTGGAGGGAGAGAAGATGGTGCTTATTGCATGTGGATGGCGCCATACAATT
ACTGTTTCTTCCTCTGGTAGTTTGTATACTTATGGTTGGAGCAAATATGGTCAACTAGGG
CATGGTGATTTTGAAGATCATTTAGTTCCACATAAACTAGAGGCCTTAAAGGATAGCTCT
ATATCGCAGATTTCAGGTGGATGGAGGCATACAATGGCGCTTACATCAGATGGAAAGCTT
TATGGTTGGGGGTGGAACAAGTTTGGGCAAGTCGGAGTTGGTGATACTGATGATCACTGT
TTCCCAGTACAGGTCAAGTTTCCAGAGGATCAGAAAGTTGCCCAAGTTGCTTGCGGGTGG
AGGCATACTCTTGCATTTACAGAAAAGAAAAATGTTTTCTCATGGGGGAGGGGTACTAGC
GGACAACTTGGTCATGGTGAAATAGTTGACAGGAACAAACCTGTGATGATTGATGCCTTA
AGCCCGGATGGTCCTGGCTGCAAGAAATTAGAGCCATCAACAGCTGTACCATTTGCAGCC
AAAGTCTGGGTCTCGCCATCAGAAAGATATGCCATTGTTCCTGATGAAAAAGTTCCAAAT
TCAGGTGAAGGCACGGCACGAGGCAACGGGGCGGACGCAAATGTACCAGAGAACGATGTA
AAGAGGATGCGTGTGCATTCGTAGGGGCCTGGACCTCCCAATTTAACTCCCTAGTACACT
ATCCAAAAACCCCCTATGTGCAACTGTTTCACCGCACGTTTCCATCCAGTGCTGTCCCAT
TTTTGTGCATCCCATTCTGCCCAAGTGATGATTTCCACGAACCCCTCCTGGTGTTGTTGA
GATCCAGTACCTATTAGGGTTATCGCAGCTGCCACTGTCTGTAATCGATCACCTGCTTAG
AGGTGATTTTAGCAAAAAACCAACCTGCACCGTTGTGGACATGTGTTTGGAATGTTTTTA
ACTTCTGTTGGAAGATGCAATAAGTGCTTGGTTCTGATCT