Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0425100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:21001722:21010712:1 gene:Os04g0425100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0425100-01);Similar to OSIGBa0076I14.12 protein. (Os04t0425100-02)
Sequence

ATGACTCCAAAATGGAGTGAATGCTCTTCAAATAGTTATAGAGAATTATCTTCAAAGGAA
AATGGAGAAGGGAAATCATCCATAACAGAAGCAGTGCCTTCATCTACAAGCTATTTTGGT
TCACCAGCTGTCAACAGAATGTGTTCTCTATCTGCACAAAAGAAGGATGGCAATGTCTAT
AAAAGGAGGAAGATGGAGAAGGATTCAACTTCCCTTACAGCAAATGAAGAATTTAAAGAA
ATGACAGCTCAAAACTGCACTTCTGAAGATCACTCTTCATTACTGCTACCTGTTACTTCA
GATGCAATGGTTTCAAATTCAACGGCACCTATCCTTGAACATGATGAGCCTGCTGGAGTT
CCGCTGGTGCCAAGATCTGGTGTGAATGATAGATCTTCAGTATCTAGTATGCTGCCACCT
TTCATGATGTTTGATAAAAAGGATGCTACTGAATGTTCCTCGTCAAATATTGGTTCTACA
GAACCAATGACAGGCTTCACATCGGCAAGGGATCTTTGCATTGCCATACTGAGGGAAGAT
GGACTCATAACTGAATCTCGAACTAAAATCAAGGCAGAGGAATTGACTGGTTATGATGCC
AACTTACTGTTCCAATGCAAAACTTGTGGGAAATCAGACCATCCATTAAAGATGCTTATA
TGTGATTCTTGCGAAGCAGCGTTCCATCTGTCTTGTTGCATCCCTCGTGTTCATGAGGTA
CCAACTGATGAATGGTATTGTCTGCCATGCTTCAGGAAGAAACCAAAGAGTCAGTATGGC
AAGCTGTCAGAGGGAAAGGTCAAATCTTCAGGGAATATCAACCAAAGGCCTCATGGCATG
AGTCATATAGAGTACATGTTAAAAGATACCAAACCATATGTTACTGGGGTTCGAATTGGT
ATAGACTTTCAAGCAGAAGTGCCAGAATGGTCTTGTCCTACTTCCAGGTGTGTCATATAA

Peptide Sequence

PEP ID

Os04t0425100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:21001722:21010712:1 gene:Os04g0425100 transcript:Os04t0425100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0425100-01);Similar to OSIGBa0076I14.12 protein. (Os04t0425100-02)
Sequence

MTPKWSECSSNSYRELSSKENGEGKSSITEAVPSSTSYFGSPAVNRMCSLSAQKKDGNVY
KRRKMEKDSTSLTANEEFKEMTAQNCTSEDHSSLLLPVTSDAMVSNSTAPILEHDEPAGV
PLVPRSGVNDRSSVSSMLPPFMMFDKKDATECSSSNIGSTEPMTGFTSARDLCIAILRED
GLITESRTKIKAEELTGYDANLLFQCKTCGKSDHPLKMLICDSCEAAFHLSCCIPRVHEV
PTDEWYCLPCFRKKPKSQYGKLSEGKVKSSGNINQRPHGMSHIEYMLKDTKPYVTGVRIG
IDFQAEVPEWSCPTSRCVI

Transcript Sequence

Transcript ID

Os04t0425100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:21001722:21010712:1 gene:Os04g0425100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0425100-01);Similar to OSIGBa0076I14.12 protein. (Os04t0425100-02)
Sequence

GTGTATCGCCATTTCGCCCAGCTTCCCGGCCTTCCTTGTCCATCTCCCTTTTCTCTCCTC
CTCCTCGCGTGCTCCCCGCGCCGCCTGCGCCGATCTCTCCGTCCCGCTGCCGGCGGCGCC
GCGCCCCCACCCCTGCTGCTGCTGCTGCTGCTTCCGCGGCATCCTCGCGGAGCTCCCCCT
CCGCTGCCGCCGATCCCCGTCCCTCGTAGCACCGGGGTGCTGGCGTCGTCCGCCCTGCTG
CTGCTGCTGCCGCTGCTTCTTCTTCTCCCGCCGCATCCTCCTCCTCGCCGGAATTGAAAT
AAAGGATTACCACATTAAGGTTGAGGGTCAGCTCGTAAAGCAAATTTTCAGCAACACACT
GATGACTCCAAAATGGAGTGAATGCTCTTCAAATAGTTATAGAGAATTATCTTCAAAGGA
AAATGGAGAAGGGAAATCATCCATAACAGAAGCAGTGCCTTCATCTACAAGCTATTTTGG
TTCACCAGCTGTCAACAGAATGTGTTCTCTATCTGCACAAAAGAAGGATGGCAATGTCTA
TAAAAGGAGGAAGATGGAGAAGGATTCAACTTCCCTTACAGCAAATGAAGAATTTAAAGA
AATGACAGCTCAAAACTGCACTTCTGAAGATCACTCTTCATTACTGCTACCTGTTACTTC
AGATGCAATGGTTTCAAATTCAACGGCACCTATCCTTGAACATGATGAGCCTGCTGGAGT
TCCGCTGGTGCCAAGATCTGGTGTGAATGATAGATCTTCAGTATCTAGTATGCTGCCACC
TTTCATGATGTTTGATAAAAAGGATGCTACTGAATGTTCCTCGTCAAATATTGGTTCTAC
AGAACCAATGACAGGCTTCACATCGGCAAGGGATCTTTGCATTGCCATACTGAGGGAAGA
TGGACTCATAACTGAATCTCGAACTAAAATCAAGGCAGAGGAATTGACTGGTTATGATGC
CAACTTACTGTTCCAATGCAAAACTTGTGGGAAATCAGACCATCCATTAAAGATGCTTAT
ATGTGATTCTTGCGAAGCAGCGTTCCATCTGTCTTGTTGCATCCCTCGTGTTCATGAGGT
ACCAACTGATGAATGGTATTGTCTGCCATGCTTCAGGAAGAAACCAAAGAGTCAGTATGG
CAAGCTGTCAGAGGGAAAGGTCAAATCTTCAGGGAATATCAACCAAAGGCCTCATGGCAT
GAGTCATATAGAGTACATGTTAAAAGATACCAAACCATATGTTACTGGGGTTCGAATTGG
TATAGACTTTCAAGCAGAAGTGCCAGAATGGTCTTGTCCTACTTCCAGGTGTGTCATATA
ATTGCTTTTAGTGTTGACATTTGCATTAAGAAAGATGGTAGATATAGTAAACATGCAAAT
TTTTTATGACAAGCTTAATATCTAGAAGCAGCTTTTTTACATGGAAACAAAGATGATTTA
ACTTTTGTTTTTGTTCTAGTCATGACAATCTGAAGTGCTGTAAGATACAGTCTTCCTAAT
CCATGAATTGAATATGATGCTAAATCATCATTATGTGAGATTGATTACTATATTTTTGTA
ATGATCTAATGCTAGTTGTTTATCATTCTGAAGAGGAATATTTTTTCTTATTGGACAAAA
AAATGCTTGTGATTTTAGTCTGGAAACTAAGTTGCTCCTTTCCTTTGCAACATGCTTTTA
ACGGTATTTACTAGTAATATTGATGTTTATTGCTACTAAAAATCATGAGAGTTCACTTAA
ATAATTGAACAAATGGAAGAACTGCCACATACCTGGGACAACAGCAAACATTTTAAAAAT
CCTTATCTTATTCTTTTGAAAACATTAAGTAATCAGGGCTGGATTGATCACTTGGGGTTG
TCTTTGATCATGACATGTTTGTTGGACAGAGACTGATTGTGCTGTTGTTGCAAAAAATTT
GGTTCACCACAGTTTCGAACTAACTTTGTACAATGACTTTGTTTTGATCTAGAGAAGTCT
TTGACATGCATATGATATCAAATCATTTCAAACATTAAGTATGTTGTAACATCCATAATG
TGCCATCTGCTTGGACTAATATGAATTATGAAATAGTTCAATCTTCATGCATTTATGTAT
AAGCTCCACATACATGGTTGCTGTTCTACCTTGTTAATACAGTGTTTTCTCCTCAAAAGT
TAAGGCTTTACCTTTTTAATTCTTGTTATTAATAGAATTTTCAGTTTTCGCATTACCATG
AATAATAAATCGTACTTAGAGCCATAGAGATATAGTGTATTATTTGTTGCATTACTGGCA
CCAGATTAGTGTAGCTTACATTCTCGTTATGTCAGCATGTTTGTCTTGTTATTCCTTTTC
TTGTAGTGGTGATGTTTATTGCGAGGAGCCCTCTGAATTTGATTCTGCTGACCTCACTAA
ACTGAACTGGTCAAAAACTAATACTCAGTATAGATCTTCAATCGGTAATTGGATACAATG
CTGTGAGATCTTGAGTGAAGGAGATTCTGATAAGCCAGTCGTCTGCGGCAAATGGAGACG
GGCACCTCTATTTGTTGTTCAGTCAGATGATTGGGACTGCTCCTGTTGTCTACCTTGGGA
TCCAGCTCACGCTGATTGTGCTGTTCCGCAGGAATTGGGTACGGATGAAGTTCTAGGGCA
GCTGAAGTACGTGAGGATGGTGAAGAATCGGCTGGTTGATCGAAATCACAAGCCTGCTAA
CGTTCAAGGATGATACAGCAGTAATTCCTATTCATCCGGTAAAGAACGGTTACCACCCAT
CATGTTGTTTTGAGTGGAGCCATCTGTTGTCTATAGAGCACCTGCAAAACATGTTGTAGC
CTCTTCCGTTACTTGATGCTAGCCATCCTTCTTTGTATTGTCCACGTAGGTTTAGATCCA
AAAGATCTGTACGACCTTTCTACGGCGTAGGCTTGTTCACGCAGTTCTCAAAGTAGTATC
TGCACAACTACTGGTTTTAGCTGCTGGCAAACAATCCTACGATCCTGCAACCGATTTTGG
TTGATGTAGTTTTTGGAACATAGGGGGGAGACAGGAGCATTTGTAACGGCATTTAGTATT
TTGTGAGCATTTCTCTAATGCTGCTGCTGCCGGCCTGGAAAGGAATGCTGCTTGGTGGTA
TTCCATTTTGTAATGCCTGTTGTTTGTAGAAGCAGTAGATATATATCGAGTTCTATGCAG
CCCAGAAGATATCTTGCATAGGCAGCCATCAGCTTGTACAAAGGAAAAAAACAAAACATT
TTGGATTTTGAAGTGCTGCGTTTTTTTAC