Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0420600-00
CDS Infomation	cds chromosome:IRGSP-1.0:4:20790084:20792816:1 gene:Os04g0420600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525E10.2 protein. (Os04t0420600-00)
Sequence	ATGGCTCTTCCCATCACTGTCCTGTTCCTCCTCTTCACACTGCACATTCCTGCATCCTGC AAGGTGACAGACACCATCTCAGCTGGGGAGACACTCGCCGGCAATGACATACTTGTCTCC AGCAACGGCAAGTTTGCGCTTGGCTTCTTCCCAACCAGCAGTAAGTCCTCCCACAATGCT TCAAACTGGTACCTGGGGATATGGTTCAACCAGGTGCCAAAGCTCACTCCAGCATGGGTT GCCAATGGAGATGAGCCTGTCACTGGCCCCACTTCGCCGGAGGCCACAATCTCCGGTGAC GGAAACCTTGTCATCTTAGATCAGGCCACAAAGTCCATCTTCTGGTCAACCCAAGCTGAC ATCACAGCAAACACAACAATGGTCAAGCTATTGGATAATGGCAACCTTGTCCTGCAGAAC ACCTCAAATTCTTCGGTTGTCTTGTGGCAAAGCTTTGACTACCCAACAAATACCCATCTC GCCGGTGCGAAGCTAGGCCGGAACAAGGTCACTGGCTTAAACCGCCGTCTTGTTTCCAGG AAAAACTCTGTAGACCCAGCTTCTGGCATGTACAGTTACGAGTTAACTGACAACAATGGT TCTACCAGGTTCATCCTTGCAGCTCTCAACTCCTCTATACCATATTGGTCTAGTGGAGAA TGGAACGGACATTACTTTGGTTCCATACCAGAGATGACAGGTCAACGCTTAATTGATTTT ACTTTTGTCAACAATGATGAAGAAGTGTACTTCACATATACCTTACTAGATAACGCAACG ATCATGCGTTTTATGCTGGACATCTCTGGTCAGACCAAGATATTTTTGTGGGTGGAGCAT GTGCAAGATTGGGTACCAACCTACACCAACCCAAAGCAGTGTGATGTGTATGGCATTTGT GGAGCTTTCACAGTCTGCGAAGAGAGCAAGCTTCCTATCTGCAAGTGTATGAAGGGCTTC TCTGTACGATCACCCAATGACTGGGAGCTAGATGATCGAACAGGCGGCTGTGTGAGAAAT ACTCCATTAGACTGTGGTATAAACAGAAACACCAGTATGCAAGACAGGTTCCACCCTATG CCGTGTGTTGGATTACCCAGTAATGGCCAAATCATAGAAGATGTTACAAGTGCAGGTGGA TGTGCACAAATTTGCCTGAGCAACTGCACTTGCACAGCATATTACTATGGTAATACTGGA TGCTCTGTTTGGAATGATGAATTGATTAATGTGAAACAGCTACAATGTGGTGATATTGCT AATACTGATGGAGCAATTCTTTACCTTCGCCTTGCTGCCAAAGAGGTGCAAAGTATAAAA AGCAGTGGACGATCAATATTCATTGGCGTTGCCATCACTGCAAGTGTTGCTTCCTTTGCT TTGGCACTCTTCTTGATAGCGAAGATCCCAAGGAACAAGAGTTGGCTGCTTGGTCACAGA AGAAAGAATTTTCATAGTGGTAGTGGAGTTATTGCATTTAGATATGCTGATCTGCAACAT GCAACAAAAAACTTTTCAGATAAGCTAGGGGCAGGTGGTTTTGGCTCAGTATTCAAAGGG CTTCTTAATGAGTCTACTGTCATAGCAGTAAAAAGGCTTGATGGTGCTCGTCAAGGAGAG AAGCAATTCAGAGCTGAAGTAGGATCAATTGGAATCATCCAACACATCAATTTAGTTAAA CTAATTGGTTTCTGTTGTGAGGGTGATAGAAGATTGCTTGTCTATGAACACATGCCAAAC CTCTCTCTTGATACCCATTTATTTCACAATGACGCTACAGTCTTGAAATGGAGCATAAGG TATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGAT TGCATTATACACTGTGACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCCA AAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGAAGGGAGTTTACTCAAGTTCTCACT ACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTATTACA TCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAGG AACTCAAGCAAAGAATTTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGCA CATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTGGACCAAAATTTACATGGCGATGTT GATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAATGAG CTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTGAAGTTGGC ATACCCCCAGTGCCACGACTACTTCAAGCTATTGCAGGCAACCCATATTCAAATTGA

Peptide Sequence

PEP ID	Os04t0420600-00
PEP Infomation	pep chromosome:IRGSP-1.0:4:20790084:20792816:1 gene:Os04g0420600 transcript:Os04t0420600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525E10.2 protein. (Os04t0420600-00)
Sequence	MALPITVLFLLFTLHIPASCKVTDTISAGETLAGNDILVSSNGKFALGFFPTSSKSSHNA SNWYLGIWFNQVPKLTPAWVANGDEPVTGPTSPEATISGDGNLVILDQATKSIFWSTQAD ITANTTMVKLLDNGNLVLQNTSNSSVVLWQSFDYPTNTHLAGAKLGRNKVTGLNRRLVSR KNSVDPASGMYSYELTDNNGSTRFILAALNSSIPYWSSGEWNGHYFGSIPEMTGQRLIDF TFVNNDEEVYFTYTLLDNATIMRFMLDISGQTKIFLWVEHVQDWVPTYTNPKQCDVYGIC GAFTVCEESKLPICKCMKGFSVRSPNDWELDDRTGGCVRNTPLDCGINRNTSMQDRFHPM PCVGLPSNGQIIEDVTSAGGCAQICLSNCTCTAYYYGNTGCSVWNDELINVKQLQCGDIA NTDGAILYLRLAAKEVQSIKSSGRSIFIGVAITASVASFALALFLIAKIPRNKSWLLGHR RKNFHSGSGVIAFRYADLQHATKNFSDKLGAGGFGSVFKGLLNESTVIAVKRLDGARQGE KQFRAEVGSIGIIQHINLVKLIGFCCEGDRRLLVYEHMPNLSLDTHLFHNDATVLKWSIR YQIALGVARGLAYLHDSCQDCIIHCDIKPENILLDASFVPKIADFGMAKFLGREFTQVLT TMRGTIGYLAPEWISGTVITSKVDVYSYGMVLLEIISGTRNSSKEFATRDDYEYFPLLVA HKLLDGNAGSLVDQNLHGDVDLEQVERAFRVACWCIQDNELDRPTMSEVVQYLEGLLEVG IPPVPRLLQAIAGNPYSN

Transcript Sequence

Transcript ID	Os04t0420600-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20790084:20792816:1 gene:Os04g0420600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525E10.2 protein. (Os04t0420600-00)
Sequence	CATGGCTCTTCCCATCACTGTCCTGTTCCTCCTCTTCACACTGCACATTCCTGCATCCTG CAAGGTGACAGACACCATCTCAGCTGGGGAGACACTCGCCGGCAATGACATACTTGTCTC CAGCAACGGCAAGTTTGCGCTTGGCTTCTTCCCAACCAGCAGTAAGTCCTCCCACAATGC TTCAAACTGGTACCTGGGGATATGGTTCAACCAGGTGCCAAAGCTCACTCCAGCATGGGT TGCCAATGGAGATGAGCCTGTCACTGGCCCCACTTCGCCGGAGGCCACAATCTCCGGTGA CGGAAACCTTGTCATCTTAGATCAGGCCACAAAGTCCATCTTCTGGTCAACCCAAGCTGA CATCACAGCAAACACAACAATGGTCAAGCTATTGGATAATGGCAACCTTGTCCTGCAGAA CACCTCAAATTCTTCGGTTGTCTTGTGGCAAAGCTTTGACTACCCAACAAATACCCATCT CGCCGGTGCGAAGCTAGGCCGGAACAAGGTCACTGGCTTAAACCGCCGTCTTGTTTCCAG GAAAAACTCTGTAGACCCAGCTTCTGGCATGTACAGTTACGAGTTAACTGACAACAATGG TTCTACCAGGTTCATCCTTGCAGCTCTCAACTCCTCTATACCATATTGGTCTAGTGGAGA ATGGAACGGACATTACTTTGGTTCCATACCAGAGATGACAGGTCAACGCTTAATTGATTT TACTTTTGTCAACAATGATGAAGAAGTGTACTTCACATATACCTTACTAGATAACGCAAC GATCATGCGTTTTATGCTGGACATCTCTGGTCAGACCAAGATATTTTTGTGGGTGGAGCA TGTGCAAGATTGGGTACCAACCTACACCAACCCAAAGCAGTGTGATGTGTATGGCATTTG TGGAGCTTTCACAGTCTGCGAAGAGAGCAAGCTTCCTATCTGCAAGTGTATGAAGGGCTT CTCTGTACGATCACCCAATGACTGGGAGCTAGATGATCGAACAGGCGGCTGTGTGAGAAA TACTCCATTAGACTGTGGTATAAACAGAAACACCAGTATGCAAGACAGGTTCCACCCTAT GCCGTGTGTTGGATTACCCAGTAATGGCCAAATCATAGAAGATGTTACAAGTGCAGGTGG ATGTGCACAAATTTGCCTGAGCAACTGCACTTGCACAGCATATTACTATGGTAATACTGG ATGCTCTGTTTGGAATGATGAATTGATTAATGTGAAACAGCTACAATGTGGTGATATTGC TAATACTGATGGAGCAATTCTTTACCTTCGCCTTGCTGCCAAAGAGGTGCAAAGTATAAA AAGCAGTGGACGATCAATATTCATTGGCGTTGCCATCACTGCAAGTGTTGCTTCCTTTGC TTTGGCACTCTTCTTGATAGCGAAGATCCCAAGGAACAAGAGTTGGCTGCTTGGTCACAG AAGAAAGAATTTTCATAGTGGTAGTGGAGTTATTGCATTTAGATATGCTGATCTGCAACA TGCAACAAAAAACTTTTCAGATAAGCTAGGGGCAGGTGGTTTTGGCTCAGTATTCAAAGG GCTTCTTAATGAGTCTACTGTCATAGCAGTAAAAAGGCTTGATGGTGCTCGTCAAGGAGA GAAGCAATTCAGAGCTGAAGTAGGATCAATTGGAATCATCCAACACATCAATTTAGTTAA ACTAATTGGTTTCTGTTGTGAGGGTGATAGAAGATTGCTTGTCTATGAACACATGCCAAA CCTCTCTCTTGATACCCATTTATTTCACAATGACGCTACAGTCTTGAAATGGAGCATAAG GTATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGA TTGCATTATACACTGTGACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCC AAAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGAAGGGAGTTTACTCAAGTTCTCAC TACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTATTAC ATCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAG GAACTCAAGCAAAGAATTTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGC ACATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTGGACCAAAATTTACATGGCGATGT TGATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAATGA GCTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTGAAGTTGG CATACCCCCAGTGCCACGACTACTTCAAGCTATTGCAGGCAACCCATATTCAAATTGATG GGTACCTGAACCAAGCTTCAGAAGAGGCAGGCCAACTGTAAGATACAATAGAGCACCGTG CACCTCATTCTTGACACGAAAGTAGCTCTGATGTAATCCTGGGGCTTCCCTTCAGTAGTT G