Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0417000-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:20592809:20596141:-1 gene:Os04g0417000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aluminum-activated malate transporter. (Os04t0417000-01)
Sequence	ATGCAATCTGCTGCCGTGGAGACGACGCCGGCGGCGGCGGCGGCGGCGGAGAACGGCGGC CAAGTGGTCGTCGTCGTCGGCGGGGGGTGGGTGGATGGATGCTGGGCGCGGGTGCGAGCG GCGGTGGAGGTGGCCGGGAGGTGGGTGGGCGGGCTGGCGAGGAAGGTGGGCGGGATCGCG GCGGACGACCCGAGGAGGGTGGCGCACTCGCTCAAGGTCGGGCTGGCGCTGACGCTGGTG TCCGTGCTCTACTACGTGACGCCGCTTTTCAAGGGGTTCGGGGTCTCCACGCTCTGGGCC GTGCTCACCGTCGTCGTCGTCATGGAGTACACCGTCGGTGGCACGCTGAGCAAAGGGTTG AACAGGGCCTTCGCGACGCTGGTGGCTGGGTTCATCGCCGTCGGGGCGCATCAGGTGGCT AACCGGTGCGGCGCACAGGGAGAGCCCATACTCCTCGCCGTCTTCGTCTTCCTACTAGCG TCGGCGGCGACGTTCTCGCGGTTCATACCGGAGATAAAGGCGAGGTACGACTACGGGGTG ACCATCTTCATCCTGACCTTCAGCCTGGTGGCCGTGTCGAGCTACCGGGTAGAGGAGCTC ATCCAGCTCGCGCACCAGCGCTTCTCCACCATCGTCGTCGGCGTCGCCACCTGCCTCTGC ACCACCATCTTCGTCATGCCCGTCTGGGCCGGCGAGGACCTCCACAAGCTCGCCGCCGGC AACCTCGACAAGCTGGCCGACTTCCTTGAAGGAATGGAAACCGAATGCTTTGGAGAAAGC GCTACGAGTGAGAGTTTGGAGGGCAAAGCCTTTCTCCAAGCGTACAAGAGCATACTTAAT TCGAAGGCCACTGAAGACTCTCTGTGCAACTTTGCCAGATGGGAGCCTGGTCATGGAAAA TTCAGTTTCAAACACCCATGGAGCCAATACCAGAAGATTGGAGCTCTTTCTCGCCAGTGC GCTTCTTCCATGGAGGCTATGGCTTCCTATGTCATCACACTCACAAAATCTCAGTATCCT GAAGCCAATCCTGAGCTGTCCTTCAAAGTACGAACAGCATGCAGTGAGATGAGCTCACAC TCTGCTCAGGCACTCAGAGAGCTCTCGGCAGCACTTCGAACAATGACCGTACCATCTACA ACCTCCATGTCTGCAGCCATCAAAGCTGCCAAAACACTCAGGAGCGAGCTATCAGAGGAT AAAGCTCTGCTGCAAGTGATGCATGTGGCAGTTACTGCATCACTTCTTTCAGACTTGGTT ACACAAGTAAAGAAAATTGCAGAATCTGTCGATAACCTGGCACGACTTGCCTGCTTCAAA GTCCCTGAAAAATCTCAGAAAGAAGTGGCTATCAACATCATGAGTTGA

Peptide Sequence

PEP ID	Os04t0417000-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:20592809:20596141:-1 gene:Os04g0417000 transcript:Os04t0417000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aluminum-activated malate transporter. (Os04t0417000-01)
Sequence	MQSAAVETTPAAAAAAENGGQVVVVVGGGWVDGCWARVRAAVEVAGRWVGGLARKVGGIA ADDPRRVAHSLKVGLALTLVSVLYYVTPLFKGFGVSTLWAVLTVVVVMEYTVGGTLSKGL NRAFATLVAGFIAVGAHQVANRCGAQGEPILLAVFVFLLASAATFSRFIPEIKARYDYGV TIFILTFSLVAVSSYRVEELIQLAHQRFSTIVVGVATCLCTTIFVMPVWAGEDLHKLAAG NLDKLADFLEGMETECFGESATSESLEGKAFLQAYKSILNSKATEDSLCNFARWEPGHGK FSFKHPWSQYQKIGALSRQCASSMEAMASYVITLTKSQYPEANPELSFKVRTACSEMSSH SAQALRELSAALRTMTVPSTTSMSAAIKAAKTLRSELSEDKALLQVMHVAVTASLLSDLV TQVKKIAESVDNLARLACFKVPEKSQKEVAINIMS

Transcript Sequence

Transcript ID	Os04t0417000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20592809:20596141:-1 gene:Os04g0417000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Aluminum-activated malate transporter. (Os04t0417000-01)
Sequence	ATCGTCTCCCGTGCTTCACTTGTAGCTATCTACTCCATCTATCAAGCCCCCAGCTCAAAG ACGTACGTACGCGGCGCTAGCTATATATACTAATTAGCTACATCGATCACTAGCTATAGC TAGCTCGATCGATAACTTATCATCGTACTTCAAGGCGATCATGCAATCTGCTGCCGTGGA GACGACGCCGGCGGCGGCGGCGGCGGCGGAGAACGGCGGCCAAGTGGTCGTCGTCGTCGG CGGGGGGTGGGTGGATGGATGCTGGGCGCGGGTGCGAGCGGCGGTGGAGGTGGCCGGGAG GTGGGTGGGCGGGCTGGCGAGGAAGGTGGGCGGGATCGCGGCGGACGACCCGAGGAGGGT GGCGCACTCGCTCAAGGTCGGGCTGGCGCTGACGCTGGTGTCCGTGCTCTACTACGTGAC GCCGCTTTTCAAGGGGTTCGGGGTCTCCACGCTCTGGGCCGTGCTCACCGTCGTCGTCGT CATGGAGTACACCGTCGGTGGCACGCTGAGCAAAGGGTTGAACAGGGCCTTCGCGACGCT GGTGGCTGGGTTCATCGCCGTCGGGGCGCATCAGGTGGCTAACCGGTGCGGCGCACAGGG AGAGCCCATACTCCTCGCCGTCTTCGTCTTCCTACTAGCGTCGGCGGCGACGTTCTCGCG GTTCATACCGGAGATAAAGGCGAGGTACGACTACGGGGTGACCATCTTCATCCTGACCTT CAGCCTGGTGGCCGTGTCGAGCTACCGGGTAGAGGAGCTCATCCAGCTCGCGCACCAGCG CTTCTCCACCATCGTCGTCGGCGTCGCCACCTGCCTCTGCACCACCATCTTCGTCATGCC CGTCTGGGCCGGCGAGGACCTCCACAAGCTCGCCGCCGGCAACCTCGACAAGCTGGCCGA CTTCCTTGAAGGAATGGAAACCGAATGCTTTGGAGAAAGCGCTACGAGTGAGAGTTTGGA GGGCAAAGCCTTTCTCCAAGCGTACAAGAGCATACTTAATTCGAAGGCCACTGAAGACTC TCTGTGCAACTTTGCCAGATGGGAGCCTGGTCATGGAAAATTCAGTTTCAAACACCCATG GAGCCAATACCAGAAGATTGGAGCTCTTTCTCGCCAGTGCGCTTCTTCCATGGAGGCTAT GGCTTCCTATGTCATCACACTCACAAAATCTCAGTATCCTGAAGCCAATCCTGAGCTGTC CTTCAAAGTACGAACAGCATGCAGTGAGATGAGCTCACACTCTGCTCAGGCACTCAGAGA GCTCTCGGCAGCACTTCGAACAATGACCGTACCATCTACAACCTCCATGTCTGCAGCCAT CAAAGCTGCCAAAACACTCAGGAGCGAGCTATCAGAGGATAAAGCTCTGCTGCAAGTGAT GCATGTGGCAGTTACTGCATCACTTCTTTCAGACTTGGTTACACAAGTAAAGAAAATTGC AGAATCTGTCGATAACCTGGCACGACTTGCCTGCTTCAAAGTCCCTGAAAAATCTCAGAA AGAAGTGGCTATCAACATCATGAGTTGACAAACTGACTACGTCGAGAGCATCAACACCAA ATGGGACAAACTAGTACGGCCTGCAATTTTATTGTGTAGGAGTATTAGCAAGTGACTAAT TCTTCGATGCTAGAAGTAATTATGATGCTGAACTGTAAAAATAAAACGTTGCAGCCTTCC GTACAACAAAGACTACTTATAAGCAGCTAAATATAAATGAACAGTTTTCTTCTT