Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0416500-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:20568655:20571227:1 gene:Os04g0416500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Immunoglobulin/major histocompatibility complex, conserved site domain containing protein. (Os04t0416500-01)
Sequence	GCCGCCGTGGACAGGGTCAGGAGAGGGGAGGCGAAGCAGCACGACGCGCTGCGTGGCGCG CAGGTGGTCAGCCTCCGCGTGTCGTCGTTCCGCGACATGCCGAGGGAGGAGGCGGAGCGG CGGCTCGCCGAGCTCCGGTGCCTCGTGAAGAGCCGCGGCGCGCGGGTGCTCCTCGTCGTC GAGGACCTCAAGTGGGCGGCCGACTTCTGGGCCGCCGCGCACGCCGGCGCCAGGAGGGTC GGCAGCGGCGGCGGCGGCGGCTACTACTGCTCTGTCGAGCACGTCGTCACCGAGGTGCGC GCCCTGGCGTCGTGCGACGGCGGCATCTGGCTCGTCGGGTTCGGGACGTACCAGACGTAC ATGAAGTGCAGGGCGGGGCATCCGTCGCTGGAGAGCATGTGGGGGCTCCAGACGCTCGCC GTCCCCGCCGGCAGCCTCGCGCTGAGCCTCACCTGCGCCTTCGACGACAGCGCGCTGGGC GCAGTCAATCAGTCCATGAAAGCGAGCCCTCACACCACCGATGGGAACCGCCCGGCGCCG TCTTGCGGGCCGCTTTTGGGCGGCAGCCACCTCCTCTCCAGATGCTGCGGCGGCGACTGC TCCGCCGCGACGACGACGCACGAGCACGACACCAAGGCGTCGTTGCCCCGCTCCTTCGTG TCGTCGTCGAGCCTCCCTTCTTGGCTCCAGCATTGCCGCGACCAGCAGCTGCAGGAGTCG ACACATTTCGCGGATCTTGGCAAGACATGGGGATCCATCTGCGGCAAGCCGTCTCAGCGG ATGACGCTGCATTTCTCGGCGCCGGTGTCGCCGGCGTCCTCCATCTCCTCCTACGAGCAC GGCCACGGCCACCAGCAGCAGCAGCACCAGCCTCACCACTCGTGGCTTCTCGCCGACCTC GACGCCAAGCACCCATGGAAGCCCAAGCGCGAGGACGACGACGACGAGAAGGCCAAGTCG CACGACGACTGCTCCGGCGCCTCCAATGGCTCGGTGGAGGTGGAGTGCCGTTCCAGGTTC AAGGAGCTCAACGCCGAGAACCTGAAGCTCCTGTGCGCCGCGCTGGAGAAGGAGGTGCCG TGGCAGAAGGAGATCGTCCCGGAGGTGGCGAGCGCCGTCCTCCAGTGCAGGTCCGGGATC GCCAAGCGGCGGGACAGGTCGAGGTCGACGGAGGCGAAGGAGGAGACGTGGCTCTTCTTC CTCGGAGGCGACGGGCACGGCAAGGAGAGGGTGGCGAGGGAGCTCGCCGGCCTCGTCTTC GGGTCACGCAAGAGCTTCCTCTCCGTCAAGCTCGGCGCCTCCTCCTCCTCGCCGTCCGCG TCGGGCTCCACCGAGGATCACCACCGGAGCAAGCGGCCGCGGACGACGACGACGTCGTCG GCGAGCGAGGCCTACCTCGAGCGGCTCTACGACGCCGTCTCGGAGAACCCGCACCGCGTC ATCCTCATCGAGGACGTCGAGCAGGGCGACCATCGCTGGCAGGTGGGCGTCAAGGAGGCC ATCGACAGAGGGGTTCTCCGGAGCCAGGCCGGCGACGAGGTCGGCGTGGGCGACGCCATC ATCATCCTGAGCTGCGAGAGCTTCGAGGCGAGGTCTAGAGCTGGCTCGCCGCTGATGAAC AAGAAGATGAAGGTGGAGAAAGAGGAAGCCAACACAAGTGATCATGATCACAAATTAGAA ATCGAATCAGGCGCCCCCTCTTCTTGCTTCGATTTGAACCTTGACATGGAGAGCGATCAA GCAGCAGATGAGCTCAGCTCCGGTGATGTCTGTCTGCTCACGGCGGTCGACCGGGTGCTG CTCTTCAGAAGGCAGGATGAAATGTAA

Peptide Sequence

PEP ID	Os04t0416500-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:20568655:20571227:1 gene:Os04g0416500 transcript:Os04t0416500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Immunoglobulin/major histocompatibility complex, conserved site domain containing protein. (Os04t0416500-01)
Sequence	AAVDRVRRGEAKQHDALRGAQVVSLRVSSFRDMPREEAERRLAELRCLVKSRGARVLLVV EDLKWAADFWAAAHAGARRVGSGGGGGYYCSVEHVVTEVRALASCDGGIWLVGFGTYQTY MKCRAGHPSLESMWGLQTLAVPAGSLALSLTCAFDDSALGAVNQSMKASPHTTDGNRPAP SCGPLLGGSHLLSRCCGGDCSAATTTHEHDTKASLPRSFVSSSSLPSWLQHCRDQQLQES THFADLGKTWGSICGKPSQRMTLHFSAPVSPASSISSYEHGHGHQQQQHQPHHSWLLADL DAKHPWKPKREDDDDEKAKSHDDCSGASNGSVEVECRSRFKELNAENLKLLCAALEKEVP WQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKERVARELAGLVF GSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERLYDAVSENPHRV ILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILSCESFEARSRAGSPLMN KKMKVEKEEANTSDHDHKLEIESGAPSSCFDLNLDMESDQAADELSSGDVCLLTAVDRVL LFRRQDEM

Transcript Sequence

Transcript ID	Os04t0416500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20568655:20571227:1 gene:Os04g0416500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Immunoglobulin/major histocompatibility complex, conserved site domain containing protein. (Os04t0416500-01)
Sequence	GCGCCGCCGTGGACAGGGTCAGGAGAGGGGAGGCGAAGCAGCACGACGCGCTGCGTGGCG CGCAGGTGGTCAGCCTCCGCGTGTCGTCGTTCCGCGACATGCCGAGGGAGGAGGCGGAGC GGCGGCTCGCCGAGCTCCGGTGCCTCGTGAAGAGCCGCGGCGCGCGGGTGCTCCTCGTCG TCGAGGACCTCAAGTGGGCGGCCGACTTCTGGGCCGCCGCGCACGCCGGCGCCAGGAGGG TCGGCAGCGGCGGCGGCGGCGGCTACTACTGCTCTGTCGAGCACGTCGTCACCGAGGTGC GCGCCCTGGCGTCGTGCGACGGCGGCATCTGGCTCGTCGGGTTCGGGACGTACCAGACGT ACATGAAGTGCAGGGCGGGGCATCCGTCGCTGGAGAGCATGTGGGGGCTCCAGACGCTCG CCGTCCCCGCCGGCAGCCTCGCGCTGAGCCTCACCTGCGCCTTCGACGACAGCGCGCTGG GCGCAGTCAATCAGTCCATGAAAGCGAGCCCTCACACCACCGATGGGAACCGCCCGGCGC CGTCTTGCGGGCCGCTTTTGGGCGGCAGCCACCTCCTCTCCAGATGCTGCGGCGGCGACT GCTCCGCCGCGACGACGACGCACGAGCACGACACCAAGGCGTCGTTGCCCCGCTCCTTCG TGTCGTCGTCGAGCCTCCCTTCTTGGCTCCAGCATTGCCGCGACCAGCAGCTGCAGGAGT CGACACATTTCGCGGATCTTGGCAAGACATGGGGATCCATCTGCGGCAAGCCGTCTCAGC GGATGACGCTGCATTTCTCGGCGCCGGTGTCGCCGGCGTCCTCCATCTCCTCCTACGAGC ACGGCCACGGCCACCAGCAGCAGCAGCACCAGCCTCACCACTCGTGGCTTCTCGCCGACC TCGACGCCAAGCACCCATGGAAGCCCAAGCGCGAGGACGACGACGACGAGAAGGCCAAGT CGCACGACGACTGCTCCGGCGCCTCCAATGGCTCGGTGGAGGTGGAGTGCCGTTCCAGGT TCAAGGAGCTCAACGCCGAGAACCTGAAGCTCCTGTGCGCCGCGCTGGAGAAGGAGGTGC CGTGGCAGAAGGAGATCGTCCCGGAGGTGGCGAGCGCCGTCCTCCAGTGCAGGTCCGGGA TCGCCAAGCGGCGGGACAGGTCGAGGTCGACGGAGGCGAAGGAGGAGACGTGGCTCTTCT TCCTCGGAGGCGACGGGCACGGCAAGGAGAGGGTGGCGAGGGAGCTCGCCGGCCTCGTCT TCGGGTCACGCAAGAGCTTCCTCTCCGTCAAGCTCGGCGCCTCCTCCTCCTCGCCGTCCG CGTCGGGCTCCACCGAGGATCACCACCGGAGCAAGCGGCCGCGGACGACGACGACGTCGT CGGCGAGCGAGGCCTACCTCGAGCGGCTCTACGACGCCGTCTCGGAGAACCCGCACCGCG TCATCCTCATCGAGGACGTCGAGCAGGGCGACCATCGCTGGCAGGTGGGCGTCAAGGAGG CCATCGACAGAGGGGTTCTCCGGAGCCAGGCCGGCGACGAGGTCGGCGTGGGCGACGCCA TCATCATCCTGAGCTGCGAGAGCTTCGAGGCGAGGTCTAGAGCTGGCTCGCCGCTGATGA ACAAGAAGATGAAGGTGGAGAAAGAGGAAGCCAACACAAGTGATCATGATCACAAATTAG AAATCGAATCAGGCGCCCCCTCTTCTTGCTTCGATTTGAACCTTGACATGGAGAGCGATC AAGCAGCAGATGAGCTCAGCTCCGGTGATGTCTGTCTGCTCACGGCGGTCGACCGGGTGC TGCTCTTCAGAAGGCAGGATGAAATGTAACACTAGTGTACATGAAGGATCCATGTTTATC AGCTAGGGTAGCTAGCTCATTGCTCGTCTAATTAGATTTTCCTTTCATTTGTTTTGATGG TTTTTTTTGTTTCTAGTATTAACTTTGGCTTTAGAGGATCATGGCATTGGTGCGGTTGGA CAATGGCATATTATGAGCTTCGTTAAGATGGAGCTCTGTTATATATTTGTGGTGGTGGTG ATCAAAT