Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0415200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:20526110:20528248:1 gene:Os04g0415200 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os04t0415200-01)
Sequence

ATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGGTATGCTATGCCGGCG
TTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGACCATCTCCGGTTTTGG
TGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGATATCGCTGGTGTCCTC
ACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTCGTCTACCTGTGGTAC
CCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGGCCGCTGGTGATGCAG
TACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAATGCCGGCGACATTCTC
ATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTCCTCCGGGGGATGGAG
TACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGGTTCTCGTTCGGAGGC
GACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGCGGTGGCGATCGGAGG
AGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAA

Peptide Sequence

PEP ID

Os04t0415200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:20526110:20528248:1 gene:Os04g0415200 transcript:Os04t0415200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os04t0415200-01)
Sequence

MSVEFLTKALTALFGYAMPALECFKAIEQRPGRTDHLRFWCQYWIILVILVIFDDIAGVL
TSKIPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDIL
IFYLKNFTDRGYDLFLRGMEYIRSQTSRGSRTRRWFSFGGDRAERSSYVDDYVAGGGDRR
STARHRRPRDDY

Transcript Sequence

Transcript ID

Os04t0415200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:20526110:20528248:1 gene:Os04g0415200 gene_biotype:protein_coding transcript_biotype:protein_coding description:TB2/DP1 and HVA22 related protein family protein. (Os04t0415200-01)
Sequence

AAGTCAGAAAGCCACCGAACAGAGCAAGGTCACTTCACGCCATTACCTTCTTCTCTCCAA
GAACTCGAGTAGATTGGGCAGGAGATTAAGATCCTGGCCAGCTTCGTCTCCAAGAATTCG
ACGCTCTGGTTCAGGATGTCGGTGGAATTCCTGACGAAAGCGCTCACGGCGCTGTTCGGG
TATGCTATGCCGGCGTTGGAGTGCTTCAAGGCGATCGAGCAGCGGCCTGGTCGGACGGAC
CATCTCCGGTTTTGGTGCCAATATTGGATCATACTAGTAATCCTCGTCATATTCGATGAT
ATCGCTGGTGTCCTCACCTCCAAGATACCAATGTACTCTGAACTCAGACTCGCCTTCCTC
GTCTACCTGTGGTACCCCCAGACAAGGGGAACTGACATCGTGTACGACACCTTCCTGCGG
CCGCTGGTGATGCAGTACCAGCCCAACATCGAGGAGCGGCTGCGCTACCTGCGTGCCAAT
GCCGGCGACATTCTCATCTTCTACCTCAAGAACTTCACCGATAGGGGCTACGATCTCTTC
CTCCGGGGGATGGAGTACATCCGGTCCCAGACGTCACGAGGCTCAAGAACGAGGCGGTGG
TTCTCGTTCGGAGGCGACCGGGCAGAGAGGTCGAGCTACGTTGATGATTATGTCGCCGGC
GGTGGCGATCGGAGGAGCACGGCGAGGCACCGGCGACCCCGCGACGATTACTAACGGGCT
GGACCGGCGCCATAGGGATTCAGTAGAGAGAGGTGCACAGGATTGGAAACTAGTTGATTA
GGAGTGACAAAATTTAAAAGGCCCAAAGCAAAACTTCTCAAAAACATGATGTGTATATAT
ATATAGACAGGTGATCACTGATCCATACTCTGGTATATATAGCTCCTCACAATTTGGCGT
TGC