Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0414100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:20458629:20462940:1 gene:Os04g0414100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os04t0414100-01);Similar to OSIGBa0137L20.4 protein. (Os04t0414100-02)
Sequence

GTGCAGCGCGGGGCTGCCGGCTCCTCGTCCAGCTCCAGCCGCTCGGGGTCACAGACACTG
CAGCAGCAGCAGCAACTGCAGGCGACATCAGCGGTTGCCCGGGAGGAGGAGCTGCCGCCG
CAGCCTCATCAGCATCCATCGGAGCTCACGGCTTCAGACAATATAACTGACCATCTAGTG
GAGGATGCTGATAACAGCAGTAATAGTAATAAGCCATTGGGGCTAGATGATCCCACATCA
GAGAGTTCAAGCTCTGCAGAGGAGAGGGCTGTTATGGAGAAACCTCCCAAAGACGACTCC
AGTGTGATCGATCCTGCTTTCTTGGTGGAGGAATTAACAGGCCTCCAGTTTTCTGATCAG
TTTGAGCAGGAAAATCTAGTGCAGTCAGGTATTGGTCCATCACAGATTGCTGGTGCAGCA
TCACACCCACCACCTCCACCAGCTCCACCAGCCCCACCACCGAAACCATCGTCTGGTAAT
AATGGGTTAAGGAGAATGGGGTCTGGAAGCTCAAACAATGCACGGATTGGATCTTCAAGA
AGGCCAGTTGCTTGGCCACCAGTGGCAGTTCGGTCATCTGCTTCGGGTTCCCGACCTTCT
TCACCTAGATCACTTGCTGATAGTGAAGGGTATAATAGTGCAGATGAGCAGGGCCCCTGT
TACGCCTCTAATTATTATGATTCGGAAAGGGAGCGCATGTTTGAACATGACCTAAGACGA
GTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGTT
GCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGAT
TACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATAT
TGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGCT
GAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTTT
CAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCAT
TACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTCC
CTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCAA
GATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTG
ACAGAGAAGGAAATAGAGCGGATGGTGATGGAGGCCTCACGAGCAGAGTATCTAAAGCAG
CAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTCTTCT
GCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGC
TTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTC
AACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGATC
TACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCAGGTGGTAGCAATCGCAGGAAA
GGAAAAGCTGCTGAGTGA

Peptide Sequence

PEP ID

Os04t0414100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:20458629:20462940:1 gene:Os04g0414100 transcript:Os04t0414100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os04t0414100-01);Similar to OSIGBa0137L20.4 protein. (Os04t0414100-02)
Sequence

VQRGAAGSSSSSSRSGSQTLQQQQQLQATSAVAREEELPPQPHQHPSELTASDNITDHLV
EDADNSSNSNKPLGLDDPTSESSSSAEERAVMEKPPKDDSSVIDPAFLVEELTGLQFSDQ
FEQENLVQSGIGPSQIAGAASHPPPPPAPPAPPPKPSSGNNGLRRMGSGSSNNARIGSSR
RPVAWPPVAVRSSASGSRPSSPRSLADSEGYNSADEQGPCYASNYYDSERERMFEHDLRR
VRGFEINKMAEDGNCLFRAVADQVYGDPEAYDMARQMCVDYMERERDHFSQFMTEGFTSY
CRRKRRDKVYGNNMEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDVPPIRLSYHHGNH
YNSVVDPRGLTVGAGLGFSSLRGTNNVDRDQVKAAIKAQQDQQIENALLAEGRLYSDLEL
TEKEIERMVMEASRAEYLKQQQQQLNFRESSTSGAEPSSSAAISGSSRSAGTADRVGEEC
FVLPDTVLTRSMQLLLAMGFNYIQVMEAYSIFGEDVDSMIYYLVEMGGTGASAGGSNRRK
GKAAE

Transcript Sequence

Transcript ID

Os04t0414100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:20458629:20462940:1 gene:Os04g0414100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ovarian tumour, otubain domain containing protein. (Os04t0414100-01);Similar to OSIGBa0137L20.4 protein. (Os04t0414100-02)
Sequence

CGTGCAGCGCGGGGCTGCCGGCTCCTCGTCCAGCTCCAGCCGCTCGGGGTCACAGACACT
GCAGCAGCAGCAGCAACTGCAGGCGACATCAGCGGTTGCCCGGGAGGAGGAGCTGCCGCC
GCAGCCTCATCAGCATCCATCGGAGCTCACGGCTTCAGACAATATAACTGACCATCTAGT
GGAGGATGCTGATAACAGCAGTAATAGTAATAAGCCATTGGGGCTAGATGATCCCACATC
AGAGAGTTCAAGCTCTGCAGAGGAGAGGGCTGTTATGGAGAAACCTCCCAAAGACGACTC
CAGTGTGATCGATCCTGCTTTCTTGGTGGAGGAATTAACAGGCCTCCAGTTTTCTGATCA
GTTTGAGCAGGAAAATCTAGTGCAGTCAGGTATTGGTCCATCACAGATTGCTGGTGCAGC
ATCACACCCACCACCTCCACCAGCTCCACCAGCCCCACCACCGAAACCATCGTCTGGTAA
TAATGGGTTAAGGAGAATGGGGTCTGGAAGCTCAAACAATGCACGGATTGGATCTTCAAG
AAGGCCAGTTGCTTGGCCACCAGTGGCAGTTCGGTCATCTGCTTCGGGTTCCCGACCTTC
TTCACCTAGATCACTTGCTGATAGTGAAGGGTATAATAGTGCAGATGAGCAGGGCCCCTG
TTACGCCTCTAATTATTATGATTCGGAAAGGGAGCGCATGTTTGAACATGACCTAAGACG
AGTGAGAGGATTTGAAATCAATAAGATGGCTGAAGATGGGAATTGTCTGTTTAGAGCAGT
TGCAGATCAAGTTTATGGTGATCCAGAAGCTTATGACATGGCTAGGCAGATGTGTGTTGA
TTACATGGAAAGGGAACGTGATCATTTCTCGCAGTTCATGACGGAAGGTTTTACATCATA
TTGTAGGAGAAAAAGAAGAGATAAGGTATATGGGAACAATATGGAGATCCAGGCATTTGC
TGAGATGTACAATCGTCCGATTCACATATATTCCTATAGTACAGAGCCCATTAACATTTT
TCAAGGAAGCTACAATACAGATGTCCCTCCAATTAGGCTAAGTTACCATCATGGTAATCA
TTACAATTCGGTGGTTGATCCTCGTGGGCTGACAGTAGGGGCAGGCCTGGGATTTAGTTC
CCTTAGAGGGACAAATAACGTTGACAGGGATCAGGTGAAGGCTGCAATAAAAGCACAGCA
AGATCAGCAGATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTT
GACAGAGAAGGAAATAGAGCGGATGGTGATGGAGGCCTCACGAGCAGAGTATCTAAAGCA
GCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGAGCCATCTTCTTC
TGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTG
CTTCGTTCTCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTT
CAACTACATCCAGGTCATGGAAGCCTATAGCATATTTGGCGAGGACGTCGACTCAATGAT
CTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCAGGTGGTAGCAATCGCAGGAA
AGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGAATCGAAATAAAAA
TAGTTATGCATAAGCCACAGGAGAGGGATGGCAAGACTCGTGGATTAAATGAGCTGAAAT
GTCAATATACTTTCCACTGTATGGAGTGATAACAAAATAAAATTCACTTCTTCCAT