Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0413200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:20412316:20415240:1 gene:Os04g0413200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cell wall invertase 4, cell-wall invertase 3 description:Similar to Cell wall invertase (EC 3.2.1.26). (Os04t0413200-01)
Sequence	ATGGCGACGGCGAGGGCGAGGGCCGCGCTGGTGTTTGTGGCTCTGCTGCAGATGGCGGCA GTGGTGGTGGTGCGCGCGTCGCACGTCGTCTACCCGGAGCTCCAGTCGCTGGAGGCGAAG CACGTCGACGGGAAGCTCCGGACCGGGTACCACTTCCAACCACCCAAGCACTGGATCAAC GATCCGAACGGTCCGATGTACTATAAGGGCTTGTACCATCTGTTCTACCAGTACAACCCC AAGGGCGCCGTGTGGGGGAACATCGAGTGGGCGCACTCGGTTTCGACGGACCTGATCGAC TGGACGGCGCTGGAGCCGGGGATCTACCCGTCCAAGACGTTCGACGAGAAGGGCTGCTGG TCGGGCTCCGCCACCGTGCTCCCCAGCGGCGTGCCGGTGATCATGTACACCGGCATCGAC CCCGACGAGCGGCAGGTCCAGAACGTCGCCTACCCGGTGAACCTCTCCGACCCGTACCTC CGCGAGTGGTACAAGCCCGACTACAACCCCATCATCAACCCGGACGGCGGCATCAACGCC AGCGCGTTCCGCGACCCGACCACCGCCTGGTACGGGCCCGACGGCCACTGGCGGCTCCTC GTCGGCAGCAAGGTGAACATGAAGGGGCTCGCCGTGCTGTACCGGAGCCGGGACTTCAAG AAGTGGGTCAAGGCGCACCACCCGCTGCACTCGGCGCACACCGGGATGTGGGAGTGCCCG GACTTCTTCCCCGTCGCTGTGGCGGGCGGGAGCCGCCACTACCGCCGCGGCGTCGACACC GCCGAGCTGCACGACGCCGCCGTGGCGGAGGAGGTCAAGTACGTGCTCAAGGTGAGCCTC GACCTGACGCGGTACGAGTACTACACCGTCGGCTGGTACGACCACGCCACCGACCGGTAC GTCCCCGACGCCGCCTTCCCCGACAACGACTACGGCCTCCGCTACGACTACGGCGACTTC TACGCATCCAAGTCGTTCTACGACCCGGCCAAGCGCCGCCGCATCGTCTGGGGCTGGGCC AACGAGTCCGACACCGTACCCGACGACCGCCGAAAGGGCTGGGCCGGCATCCAGGCGATA CCGAGGAAGCTCTGGCTGTCGGCGGACGGGAAGCAGCTGGTGCAGTGGCCGGTGGAGGAG CTCAAGGCGCTGCGAGCCAAGCACGTCAATGTCACTGACAAGGTCATCAAGAAGGGCAAC TACTTCGAGGTCACCGGCTTCAAGTCCGTGCAGTCGGATGTGGATATGGCGTTCGCGATC AAGGACCTGAGCAAGGCGGAGGAGTTCGACCCGGCGTGGCGGACGGACGCGGAGGCGCTG TGCAAGAAGCTCGGCTCGGACGTCGACGGCGGCGTGGGGCCGTTCGGGCTGTGGGCGCTG GCCTCCGGCGACCTCAAGGAGAGGACGGCCGTCTTCTTCAGGGTGTTCAAGGCCAACGAC TCCTCGCACGTCGTCCTCATGTGCAACGACCCTACCAGGTCATCGTACGAGTCGAAGATC TACAGGCCGACCTTCGCCGGCTTCGTCGACGTCGACATCGCCAAGAACAAACAAATCGCC CTCCGGACATTGATCGATCACTCCGTGGTGGAGAGCTTCGGGGCGCGCGGCAAGACGTGC ATCCTGACGAGGGTGTACCCGAGGAAAGCCGTCGGCGACGACGCGCACCTCTTCGTCTTC AACAACGGCGAGTCGGACGTCAAGGTCACCAACCTGGACGCCTGGGAGATGAAGACCCCG AAGATGAACGCGGAGGAGTAG

Peptide Sequence

PEP ID	Os04t0413200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:20412316:20415240:1 gene:Os04g0413200 transcript:Os04t0413200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cell wall invertase 4, cell-wall invertase 3 description:Similar to Cell wall invertase (EC 3.2.1.26). (Os04t0413200-01)
Sequence	MATARARAALVFVALLQMAAVVVVRASHVVYPELQSLEAKHVDGKLRTGYHFQPPKHWIN DPNGPMYYKGLYHLFYQYNPKGAVWGNIEWAHSVSTDLIDWTALEPGIYPSKTFDEKGCW SGSATVLPSGVPVIMYTGIDPDERQVQNVAYPVNLSDPYLREWYKPDYNPIINPDGGINA SAFRDPTTAWYGPDGHWRLLVGSKVNMKGLAVLYRSRDFKKWVKAHHPLHSAHTGMWECP DFFPVAVAGGSRHYRRGVDTAELHDAAVAEEVKYVLKVSLDLTRYEYYTVGWYDHATDRY VPDAAFPDNDYGLRYDYGDFYASKSFYDPAKRRRIVWGWANESDTVPDDRRKGWAGIQAI PRKLWLSADGKQLVQWPVEELKALRAKHVNVTDKVIKKGNYFEVTGFKSVQSDVDMAFAI KDLSKAEEFDPAWRTDAEALCKKLGSDVDGGVGPFGLWALASGDLKERTAVFFRVFKAND SSHVVLMCNDPTRSSYESKIYRPTFAGFVDVDIAKNKQIALRTLIDHSVVESFGARGKTC ILTRVYPRKAVGDDAHLFVFNNGESDVKVTNLDAWEMKTPKMNAEE

Transcript Sequence

Transcript ID	Os04t0413200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20412316:20415240:1 gene:Os04g0413200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cell wall invertase 4, cell-wall invertase 3 description:Similar to Cell wall invertase (EC 3.2.1.26). (Os04t0413200-01)
Sequence	TTGATCATCCGAGTCCTAACTGGGTCTCACTAAGCGAGGTAAGTAGTGTGTTAGTGGAAA TGGCGACGGCGAGGGCGAGGGCCGCGCTGGTGTTTGTGGCTCTGCTGCAGATGGCGGCAG TGGTGGTGGTGCGCGCGTCGCACGTCGTCTACCCGGAGCTCCAGTCGCTGGAGGCGAAGC ACGTCGACGGGAAGCTCCGGACCGGGTACCACTTCCAACCACCCAAGCACTGGATCAACG ATCCGAACGGTCCGATGTACTATAAGGGCTTGTACCATCTGTTCTACCAGTACAACCCCA AGGGCGCCGTGTGGGGGAACATCGAGTGGGCGCACTCGGTTTCGACGGACCTGATCGACT GGACGGCGCTGGAGCCGGGGATCTACCCGTCCAAGACGTTCGACGAGAAGGGCTGCTGGT CGGGCTCCGCCACCGTGCTCCCCAGCGGCGTGCCGGTGATCATGTACACCGGCATCGACC CCGACGAGCGGCAGGTCCAGAACGTCGCCTACCCGGTGAACCTCTCCGACCCGTACCTCC GCGAGTGGTACAAGCCCGACTACAACCCCATCATCAACCCGGACGGCGGCATCAACGCCA GCGCGTTCCGCGACCCGACCACCGCCTGGTACGGGCCCGACGGCCACTGGCGGCTCCTCG TCGGCAGCAAGGTGAACATGAAGGGGCTCGCCGTGCTGTACCGGAGCCGGGACTTCAAGA AGTGGGTCAAGGCGCACCACCCGCTGCACTCGGCGCACACCGGGATGTGGGAGTGCCCGG ACTTCTTCCCCGTCGCTGTGGCGGGCGGGAGCCGCCACTACCGCCGCGGCGTCGACACCG CCGAGCTGCACGACGCCGCCGTGGCGGAGGAGGTCAAGTACGTGCTCAAGGTGAGCCTCG ACCTGACGCGGTACGAGTACTACACCGTCGGCTGGTACGACCACGCCACCGACCGGTACG TCCCCGACGCCGCCTTCCCCGACAACGACTACGGCCTCCGCTACGACTACGGCGACTTCT ACGCATCCAAGTCGTTCTACGACCCGGCCAAGCGCCGCCGCATCGTCTGGGGCTGGGCCA ACGAGTCCGACACCGTACCCGACGACCGCCGAAAGGGCTGGGCCGGCATCCAGGCGATAC CGAGGAAGCTCTGGCTGTCGGCGGACGGGAAGCAGCTGGTGCAGTGGCCGGTGGAGGAGC TCAAGGCGCTGCGAGCCAAGCACGTCAATGTCACTGACAAGGTCATCAAGAAGGGCAACT ACTTCGAGGTCACCGGCTTCAAGTCCGTGCAGTCGGATGTGGATATGGCGTTCGCGATCA AGGACCTGAGCAAGGCGGAGGAGTTCGACCCGGCGTGGCGGACGGACGCGGAGGCGCTGT GCAAGAAGCTCGGCTCGGACGTCGACGGCGGCGTGGGGCCGTTCGGGCTGTGGGCGCTGG CCTCCGGCGACCTCAAGGAGAGGACGGCCGTCTTCTTCAGGGTGTTCAAGGCCAACGACT CCTCGCACGTCGTCCTCATGTGCAACGACCCTACCAGGTCATCGTACGAGTCGAAGATCT ACAGGCCGACCTTCGCCGGCTTCGTCGACGTCGACATCGCCAAGAACAAACAAATCGCCC TCCGGACATTGATCGATCACTCCGTGGTGGAGAGCTTCGGGGCGCGCGGCAAGACGTGCA TCCTGACGAGGGTGTACCCGAGGAAAGCCGTCGGCGACGACGCGCACCTCTTCGTCTTCA ACAACGGCGAGTCGGACGTCAAGGTCACCAACCTGGACGCCTGGGAGATGAAGACCCCGA AGATGAACGCGGAGGAGTAGCAGCAGTAGCAAGCAGCACATCAGCCTAGACATGGTGGTT GTAGCAGTACTGGTAGAGTAGCCGCCTAGCCGGGCGTTTAGCTAGCTACTCTCTCCGTCC CAAAATAAGTCCAGTTTTAACACTGTTCATGTCCAACATTTGACCGTTCGTCTTATTTGA AAAAAGATTATGATTAGTATTTTTATTGTTATTAGATGATAAAACATGAATAGTACTTTA TGTGTGACTAATTTTTAAATATTTTTTATAAATTTTTCAAACAGACGGATGGTCAAAACG CTGAGTACGCATATCTATGGCTGCACTTATTTTGGGACGGAGGTAGTAGATACTAGCTTC TTTAGCTGAGATTTTGGGATAAATTTGGAGGCTGCAGTGTAGTGTTTTGATGCATTGTTA GGGAAAGAAATGGTCTGTTTTGTATCATAATTGTTGCACTCAATGCGTGAAGAAAGTATT GCTGG