Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0412100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:20358641:20359628:1 gene:Os04g0412100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0717B12.8 protein. (Os04t0412100-01)
Sequence

ATGGCGACTTCCGGCGACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAG
CCATGCATGGGCGTCGGCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCG
CTGGCGGCCGAGACGACGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAG
ACGTCGACGTCAGAGTCGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGT
GAGGCGGCGGCGGTTATTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAG
GAGCAGGTAGCGAAGAAGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAG
AGCGCGCGGGAGAGGCTGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCG
GACATGTGGGGGCAGGAGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGC
CCGCTCGTGCCGCCCGACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCG
CGCCGCCCGGACCGGACGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATC
CAGCCCTCTCCGGGTGCAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAG

Peptide Sequence

PEP ID

Os04t0412100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:20358641:20359628:1 gene:Os04g0412100 transcript:Os04t0412100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0717B12.8 protein. (Os04t0412100-01)
Sequence

MATSGDVEEVPEPGMDHPAEPCMGVGGDQLVPTTEEISLPLAAETTSDHHEAAQLEQSAE
TSTSESESEEVAAKTTSDSSEAAAVIPKHAAEGSSTASEEEQVAKKELKEAEEDDGLQGE
SARERLKRHRREMAGRVWVPDMWGQEKLLKDWVDCAAFDRPLVPPDLLTARRALVAECCA
RRPDRTTTPPGPDDDAARQIQPSPGAKKLLLIIELDY

Transcript Sequence

Transcript ID

Os04t0412100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:20358641:20359628:1 gene:Os04g0412100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0717B12.8 protein. (Os04t0412100-01)
Sequence

GAGCCGCTGCTGCTGCGGTAGCTAGCTTGCTTGCCGTTCGTTCGTGTGTGTGTGCGTGTG
CGTAAGCTTAAGAGGTTGATTGGCTAAGCTAGCAAGCCGGCCGCATGGCGACTTCCGGCG
ACGTCGAAGAGGTGCCGGAGCCGGGCATGGATCACCCGGCTGAGCCATGCATGGGCGTCG
GCGGCGACCAGCTGGTGCCGACGACGGAGGAAATAAGCCTCCCGCTGGCGGCCGAGACGA
CGTCAGATCACCATGAAGCGGCACAGCTGGAGCAGTCCGCGGAGACGTCGACGTCAGAGT
CGGAATCAGAGGAGGTGGCCGCCAAGACGACGTCCGATTCCAGTGAGGCGGCGGCGGTTA
TTCCCAAGCACGCCGCGGAGGGTTCGTCGACGGCGTCAGAGGAGGAGCAGGTAGCGAAGA
AGGAGCTGAAGGAAGCCGAGGAGGACGATGGCCTGCAGGGCGAGAGCGCGCGGGAGAGGC
TGAAGCGGCACAGGCGGGAGATGGCCGGGAGGGTGTGGGTGCCGGACATGTGGGGGCAGG
AGAAGCTGCTCAAGGACTGGGTGGACTGCGCCGCCTTCGACCGCCCGCTCGTGCCGCCCG
ACCTGCTCACGGCGCGCCGGGCGCTCGTCGCCGAGTGCTGCGCGCGCCGCCCGGACCGGA
CGACGACGCCGCCCGGACCGGACGACGACGCCGCCCGCCAGATCCAGCCCTCTCCGGGTG
CAAAAAAGCTGCTCCTGATTATCGAGCTTGATTACTAGCAGCGCTTCAATTCGCCTCCAG
CTTCACTAGCCATATTAGCTAGCCGCGTGCATACGCCTTCTTTTTTTGCTCAAATAAGAG
ATATTACCCTTCTTGTTTCCGAGTTGTGAAGGTCCTTTTTTTTTCCTGTTCTAAACTTCT
AATTCTGATGATAGTGTGAATTACATTTACTGATTTACACATATATGAGCTTTCCCTGCA
TAAAGAAAGGGTTTTGTCATGTATATAT