Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0404800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:20077907:20082924:1 gene:Os04g0404800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.5 protein. (Os04t0404800-01)
Sequence	ATGGCCCAGCTGCATATATACGCCAGCTGCGGCTGCGCACGCGCCCGCGCTGCGATCCCG CTTCCCGCGCAGGCTCAGGCATCCGCTGCGGCTCTACCTTGGGTGATGTCCGTGACTTCG CCGCCGCTGCTCCGGCGAGGAGGGTGGGCGATGGGCGCGAGCGATCACGCCGCGGTGGCG GCGGCGGCGAGCGGTAACGGCAAGCCGCGGGCGAGGAGGCCCTCCGCCGCCGCGGCGGCC GTGCTGGGCGAGCCGGTGGCGGCGTCCGACGACCACGGCCTCGTCCACCCCAGCACGGAC TTCGCCTCCCAGGCCCTCGTCTCCTCCACGCAGCAGTACCAAGAAATGTACCGACGTTCG ATCGACGATCCGGCCGGGTTCTGGTCGGAGATCGCGGAGACGTTCTACTGGAAGCACAAG TGGAACCCTGACGAGGTCTGCACCGAGAATCTGGATGTCACCAAGGGGCCGATCAAGATC GAATGGTTCAAAGGGGGCAAGACCAATATATGCTACAATGCGGTGGACCGCAACGTGGAG GCTGGCGACGGCGAGAAGATAGCGATGTACTGGGAAGGGAACGAGCCCGGCCAGGACGCG AAGCTCACCTACTCCGAGCTCCTGAACAAGGTTTGCCAGCTGGCAAATTACCTGAAGAGC GTCGGCGTCGGGAAGGGTGATGCCGTGGTGATCTACCTGCCGATGCTGATGGAGCTGCCC ATTGCGATGCTCGCGTGTGCTCGGATTGGCGCTGTTCATTCGGTTGTGTTTGCTGGCTTC TCTGCTGACGCACTAGCACAAAGAATCATTGACTGCAAGCCTAAGGTTGTGATTACGTGC AACGCGGTGAAAAGGGGAAAGAAACTCATAGCTCTCAAAGATATAGTAGATGTGTCGCTG GCTGACAGTGCGAAGAATGGAGTCGATGTAGGCATTTCTTTGACATACGAAAATCAGTCG GCAATGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGGATGTT GTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTT CTTCTATATACAAGTGGTAGCACAGGAAAGCCAAAGGGTGTATTGCATACAACGGGAGGC TATATGGTGTACTCTGCAACAACATTTAAGCACGCATTTGATTACAAGCCATCAGATATA TACTGGTGCACTGCAGACTGTGGGTGGATTACTGGGCATAGTTATGTGACATATGGTCCT CTCCTGAATGGAGCCACAGTTCTTGTTTACGAAGGGGCTCCAAACTATCCTGATCCTAGT CGTTGTTGGGACGTTGTTGACAAATACGGGGTGACGATATTTTATACTGCACCAACACTT ATTCGTGCACTCATGCGTGATGGTACCGAGTATGTTACTCGGTATTCTCGTAAATCTCTT CGAGTTCTAGGAAGCGTAGGCGAGCCAATCAATCCCACTGCTTGGAGATGGTTCTATGAT ATTATTGGTGATGCAAGATGCCCAATATCAGACACTTGGTGGCAGACTGAAACTGGTGGT TTTATGATCACTCCTTTACCTGGCGCTTGGCCTCTGAAACCCGGATCTGCGACATTTCCT TTCTTCGGTGTACAGCCAGTAATAGTAGATGAGAAAGGGAAGGAAATGGAAGGAGAATGC AGCGGATACCTTTGCATAAAGAAGTCATGGCCTGGGGCTTTCCGGACACTTTATGGAGAC AAGGACAGATATGAAACCACATACTTCAAGCCATTTGCTGGCTATTACTTCTCCGGTGAT GGTTGCAGCAGGGACAAAGATGGATACCATTTTCTGACTGGACGGGTTGACGATGTTATC AATGTCAGCGGCCACCGGATTGGGACAGCAGAGGTTGAGTCTGCTCTGGTTTCACATCCA AAATGCGCCGAGGCCGCTGTTGTTGGAATTGACCATGAGGTTAAAGGCCAGGGAATTTAC GCTTTCGTGACATTGGTGGACGGTGTTCCTTACAGCGATGAGCTACGGAAAAGCCTCGTT ATGACTGTTCGCAGCCAGATTGGGGCGTTCGCGGCGCCGGACAAGATCCACTGGGCGCCG GGGCTCCCGAAGACGCGGAGCGGCAAGATCATGCGGAGGATCCTGCGGAAGATCGCGTCC AGGCAGCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCAGGCGTCGTCGACCAG CTCATCGCGCTCGCCGATAGCTAG

Peptide Sequence

PEP ID	Os04t0404800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:20077907:20082924:1 gene:Os04g0404800 transcript:Os04t0404800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.5 protein. (Os04t0404800-01)
Sequence	MAQLHIYASCGCARARAAIPLPAQAQASAAALPWVMSVTSPPLLRRGGWAMGASDHAAVA AAASGNGKPRARRPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQYQEMYRRS IDDPAGFWSEIAETFYWKHKWNPDEVCTENLDVTKGPIKIEWFKGGKTNICYNAVDRNVE AGDGEKIAMYWEGNEPGQDAKLTYSELLNKVCQLANYLKSVGVGKGDAVVIYLPMLMELP IAMLACARIGAVHSVVFAGFSADALAQRIIDCKPKVVITCNAVKRGKKLIALKDIVDVSL ADSAKNGVDVGISLTYENQSAMKREDTKWTSGRDVWWQDVVPNFPTKCDVEWVDAEDPLF LLYTSGSTGKPKGVLHTTGGYMVYSATTFKHAFDYKPSDIYWCTADCGWITGHSYVTYGP LLNGATVLVYEGAPNYPDPSRCWDVVDKYGVTIFYTAPTLIRALMRDGTEYVTRYSRKSL RVLGSVGEPINPTAWRWFYDIIGDARCPISDTWWQTETGGFMITPLPGAWPLKPGSATFP FFGVQPVIVDEKGKEMEGECSGYLCIKKSWPGAFRTLYGDKDRYETTYFKPFAGYYFSGD GCSRDKDGYHFLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGIDHEVKGQGIY AFVTLVDGVPYSDELRKSLVMTVRSQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS RQLDELGDTSTLAEPGVVDQLIALADS

Transcript Sequence

Transcript ID	Os04t0404800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20077907:20082924:1 gene:Os04g0404800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0502B11.5 protein. (Os04t0404800-01)
Sequence	ACGTAGAGTGTAGAGAGAGAGGGGGGGCCTTCGTTTCTCCGCAACCCACCACCATCCCGC CTGATTTGCATCCTCCACCAGCTGAAGCCGGCAGCAAAGTCAGAAAGGTGTTTGTTGTTG TTGGAGGCTTGGAGCGCGCGCGGGCAGGGGGAGGGGGAGGTGAGCCGTGGCCGTCATGGC CCAGCTGCATATATACGCCAGCTGCGGCTGCGCACGCGCCCGCGCTGCGATCCCGCTTCC CGCGCAGGCTCAGGCATCCGCTGCGGCTCTACCTTGGGTGATGTCCGTGACTTCGCCGCC GCTGCTCCGGCGAGGAGGGTGGGCGATGGGCGCGAGCGATCACGCCGCGGTGGCGGCGGC GGCGAGCGGTAACGGCAAGCCGCGGGCGAGGAGGCCCTCCGCCGCCGCGGCGGCCGTGCT GGGCGAGCCGGTGGCGGCGTCCGACGACCACGGCCTCGTCCACCCCAGCACGGACTTCGC CTCCCAGGCCCTCGTCTCCTCCACGCAGCAGTACCAAGAAATGTACCGACGTTCGATCGA CGATCCGGCCGGGTTCTGGTCGGAGATCGCGGAGACGTTCTACTGGAAGCACAAGTGGAA CCCTGACGAGGTCTGCACCGAGAATCTGGATGTCACCAAGGGGCCGATCAAGATCGAATG GTTCAAAGGGGGCAAGACCAATATATGCTACAATGCGGTGGACCGCAACGTGGAGGCTGG CGACGGCGAGAAGATAGCGATGTACTGGGAAGGGAACGAGCCCGGCCAGGACGCGAAGCT CACCTACTCCGAGCTCCTGAACAAGGTTTGCCAGCTGGCAAATTACCTGAAGAGCGTCGG CGTCGGGAAGGGTGATGCCGTGGTGATCTACCTGCCGATGCTGATGGAGCTGCCCATTGC GATGCTCGCGTGTGCTCGGATTGGCGCTGTTCATTCGGTTGTGTTTGCTGGCTTCTCTGC TGACGCACTAGCACAAAGAATCATTGACTGCAAGCCTAAGGTTGTGATTACGTGCAACGC GGTGAAAAGGGGAAAGAAACTCATAGCTCTCAAAGATATAGTAGATGTGTCGCTGGCTGA CAGTGCGAAGAATGGAGTCGATGTAGGCATTTCTTTGACATACGAAAATCAGTCGGCAAT GAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGGATGTTGTGCC CAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCT ATATACAAGTGGTAGCACAGGAAAGCCAAAGGGTGTATTGCATACAACGGGAGGCTATAT GGTGTACTCTGCAACAACATTTAAGCACGCATTTGATTACAAGCCATCAGATATATACTG GTGCACTGCAGACTGTGGGTGGATTACTGGGCATAGTTATGTGACATATGGTCCTCTCCT GAATGGAGCCACAGTTCTTGTTTACGAAGGGGCTCCAAACTATCCTGATCCTAGTCGTTG TTGGGACGTTGTTGACAAATACGGGGTGACGATATTTTATACTGCACCAACACTTATTCG TGCACTCATGCGTGATGGTACCGAGTATGTTACTCGGTATTCTCGTAAATCTCTTCGAGT TCTAGGAAGCGTAGGCGAGCCAATCAATCCCACTGCTTGGAGATGGTTCTATGATATTAT TGGTGATGCAAGATGCCCAATATCAGACACTTGGTGGCAGACTGAAACTGGTGGTTTTAT GATCACTCCTTTACCTGGCGCTTGGCCTCTGAAACCCGGATCTGCGACATTTCCTTTCTT CGGTGTACAGCCAGTAATAGTAGATGAGAAAGGGAAGGAAATGGAAGGAGAATGCAGCGG ATACCTTTGCATAAAGAAGTCATGGCCTGGGGCTTTCCGGACACTTTATGGAGACAAGGA CAGATATGAAACCACATACTTCAAGCCATTTGCTGGCTATTACTTCTCCGGTGATGGTTG CAGCAGGGACAAAGATGGATACCATTTTCTGACTGGACGGGTTGACGATGTTATCAATGT CAGCGGCCACCGGATTGGGACAGCAGAGGTTGAGTCTGCTCTGGTTTCACATCCAAAATG CGCCGAGGCCGCTGTTGTTGGAATTGACCATGAGGTTAAAGGCCAGGGAATTTACGCTTT CGTGACATTGGTGGACGGTGTTCCTTACAGCGATGAGCTACGGAAAAGCCTCGTTATGAC TGTTCGCAGCCAGATTGGGGCGTTCGCGGCGCCGGACAAGATCCACTGGGCGCCGGGGCT CCCGAAGACGCGGAGCGGCAAGATCATGCGGAGGATCCTGCGGAAGATCGCGTCCAGGCA GCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCAGGCGTCGTCGACCAGCTCAT CGCGCTCGCCGATAGCTAGCTTTAGCTAAAGCCACCGTCGTCTCGTCGCGCGCGAGGAAC CTCTGCTCGGCCGAGAGTCTCATTTTCGTTATGAGCAAGATTACATTCTTATTCCATCAA AAAAAATATGAATGATTTTTTTATGTGTCAGAAAAAATGGACTTTTTTATGTGC