Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0403400-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:20009913:20015529:1 gene:Os04g0403400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tyrosyl-DNA phosphodiesterase family protein. (Os04t0403400-01)
Sequence	ATGGAGGCGGAGCCGCCGCCGGAGAACCGCCACGACGACCACCACCCCTCCACTTCCGGC GGAGGCCTGGGCTACTTCCACCTCCGCCTCCTCTGCCCCGCCGCGCCACTCCTCCTCCTC CTCCGCTCCGACCGCCTCTACTCCCTCTCCCTCTCCCGCCGCCGCGGCCCCCGCCTCCGC CTCCTCGCCTCCCCTCGCCGCCGCCACGGCCGGCGACGGCGGGCCCTCCTCCTCAGCACA TCGGGCTGCGCCCTCCGCCTCACCCACCGCTCCTCCAGCGCCGACGCCGTGCGCGTCAAC GGCCGGCCCCTCCTCCGCGGTGGGTGCCCGGCCGATCTGGCCGTCGGCGACGAGGTCTCG CTACTCCGCCGTGGCACCAGGTATGGATTCTTGGTGGAGAAATTCGTCTCCTGCGAACGG CCCAAATTGGCGGCGGCGGAGCCCTGCGGGGAGGTTCTTGTGCTGCGGGCCGAGTCGCTC CGGAAGCGGCTGAGGGCGATCTCGGAGAGTCATGATCCTCTCTCTTTCTTGAGGGATTCA CATTGTGTGGAGAACGGCAGCGATGATGTTAGGGTGAAAAAGGCGAGAGAAGAAGATGTT TTCTTGCCCCTGAACCTGAATGCTCCAATTGACCCTGTTGCCGTGGAGGGTTTACTGCGA GAAGACTGTAATCTTGGCCAGGGGAAATTGGAGCACTGCACTGATTCAGCAATTGCAAAA AATGAAACTGATGAATTGATTCAACGGAGCAAGGGGTCCTGCGATGGCAATACAGAGCAG AAGGAATACAGCAATGAGAACACAGAGCAGCAGCACAATGAGAATGAGGGTTGCTATTCA GATGGGAGCACATTCTTCCTGAATCGCCTCATTGGTATTGGGTCTGATATGAGGGTGGAG CAACGGAGTGGAGTGACACTTCCACAGCTTCTGCATCCCATGGATAGCTTGGAGCGAGTA TTTATCGCAACATTCACCTCCGATGTTTCCTGGTTTCTGGATTACTGTAAGGTTCCACAG AACCTGCCGGTGACGATAGCATGCCACAACAAGGAGAGGTGCTGGAGTGCGAGTCGCGAA AGTAGAACCGCTGCCCCTTTCGGAAGTTATCCTAACCTACTATTAGTTTACCCCCAATTC CCAGAGGAGATAGCATTTGGAAAGGATAGGAAGAAGCAAGGAGTGGCATGCCACCATCCA AAGCTCTTAGTGCTACAGAGGAAAGACAGCATGCGTGTCATTGTCACTTCAGCTAACTTA GTACCTAGGCAGTGGCATCTCATAACAAACACGGTGTGGTGGCAAGATTTCCCTTGTAGG ACATCCACAGATTATTCAGCTCTTTTTAGTAAAGTTGAGGAATCAAAATCAGATTTCGCT ACTCAATTAGTTTCATTCATAGCATTCCTTATCAATGAAGTTCCTAGCCAATCATATTGG ATAAATGAGATAGCCAAGTATAATTTTGAAGGAGCTGCTGGATACCTCATTGCTTCCGTT CCAGGGATATATGCACGCAATCCTCACTATCTGGAGTCCAATTATTGCCTTTCAAGAAAA CAGATATTACACACCAAATCGGCACATAGGATGTTTCTTGGTTCTGTCCAAACATCCGTA GTTGGTCTGTCCCATCGGTTTCATATACCATCTGATGCTGGTTCTAAACTGAAAGCCCTG TCTGTACTTCTTAGTAAATGCCATGTGAACATGCATGGAACTACAGAAGTGATCTTGAAG AGGAATACAAATATACCTGCAGATGCTAATGCTGTGAGTGTCCTAGTTGCTGATCTGGAT AAATTTACCGAGGAAGATTCAGTCCATCTTGGTTTCCTGCCTAGAGAGGTTGCAAAGTGG GTATCTCCCCTCAGTGACTTGGGGTTCTTCACATTTTCTGGATTTATCTACCCCAGAGAA GCCCTGGAAGCTGCATATGGAGCAACTAACACAAAAGTGCAGTTGCTTCTCTATGTATCA AAGGGTCCAGAGTTTTCTCAAATTTCAAGACTGATCCAGGATGAACATTTTCCTCTTCTG TGCTCATTAGTAGCATCCTTAAAGCGGTCCCTTGGACTTTGGCGATTAGAAGAGGTGTTG TCACATTTCAAATGGCCTGAAACACTTGAGACTGATTTTTTCTACAGTGCTTCATCCATT GGGACTTCAATTAATCCACAATTCATTGCAAGCTTTGCTTCAGCAGCTGGTAAACGATGT AATCAGGATTTGGACTCCGAAGAGTCTGATCCAGAGTGGGGTTGCTGGACAGCAAACCAT GAGCTAAAGAAGCCATCTATCAATTTGTTGTTTCCAACAATTGACAGAGTGAAAAATGGG GCTTGTGGAATTCAGTTATCCAGGCATTTGCTTTCTCTTCCTGAGAGAACATGGCAAAGA CTGAGATCTACTGGCATATTTCGTGACGCAATCCCACATCCATACGAGAGGATAGGGCAT CCTATGCATGTCAAGGTTGCCCAGAGACGCTTCGAGTCTCGTCTAGGCAGACACTCATTC GGCTGGACTTACTGTGGGTCTCACAATTTCAGTCCAGCAGCCTGGGGACAACAACTTCCT CCACCAAAAGCAAATCCTACTGAAGCCAGAGCCGTTTCTTCTGGTCCGAGGCTACACATT TGCAACTATGAGCTCGGCATCATCCTCATTATTCCACCATCTGCCATGTCAAAGCAGATC AGTGGAAGGAGGCACGAGATCAATGACATTGTCCTGCCATTCGTCGTCCCTCCACCGCAA TATAAGCTGGGCGATAGGCCTGCGACATCGTTAGCCATGCGAGAGGCCATGGCTGAAGCT AGAATTCTGCAGAGTAACGATTTAGTACTGGACTTGTCACAGGATACAGACGAGGATATA CCTGATGAAGATGATGAGCATGTGATTGAGCTGTCTGATTGCTCCCCTGAAGAGAAGGAA GAGGAGAAGATCTACGCAGAGACGCTGTGGGAGCAAGTAGACTCTTCACAAAGACCAGGC TGGCCAGTGAAGTTGAAGTCCAGATGTTTCGGATGA

Peptide Sequence

PEP ID	Os04t0403400-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:20009913:20015529:1 gene:Os04g0403400 transcript:Os04t0403400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tyrosyl-DNA phosphodiesterase family protein. (Os04t0403400-01)
Sequence	MEAEPPPENRHDDHHPSTSGGGLGYFHLRLLCPAAPLLLLLRSDRLYSLSLSRRRGPRLR LLASPRRRHGRRRRALLLSTSGCALRLTHRSSSADAVRVNGRPLLRGGCPADLAVGDEVS LLRRGTRYGFLVEKFVSCERPKLAAAEPCGEVLVLRAESLRKRLRAISESHDPLSFLRDS HCVENGSDDVRVKKAREEDVFLPLNLNAPIDPVAVEGLLREDCNLGQGKLEHCTDSAIAK NETDELIQRSKGSCDGNTEQKEYSNENTEQQHNENEGCYSDGSTFFLNRLIGIGSDMRVE QRSGVTLPQLLHPMDSLERVFIATFTSDVSWFLDYCKVPQNLPVTIACHNKERCWSASRE SRTAAPFGSYPNLLLVYPQFPEEIAFGKDRKKQGVACHHPKLLVLQRKDSMRVIVTSANL VPRQWHLITNTVWWQDFPCRTSTDYSALFSKVEESKSDFATQLVSFIAFLINEVPSQSYW INEIAKYNFEGAAGYLIASVPGIYARNPHYLESNYCLSRKQILHTKSAHRMFLGSVQTSV VGLSHRFHIPSDAGSKLKALSVLLSKCHVNMHGTTEVILKRNTNIPADANAVSVLVADLD KFTEEDSVHLGFLPREVAKWVSPLSDLGFFTFSGFIYPREALEAAYGATNTKVQLLLYVS KGPEFSQISRLIQDEHFPLLCSLVASLKRSLGLWRLEEVLSHFKWPETLETDFFYSASSI GTSINPQFIASFASAAGKRCNQDLDSEESDPEWGCWTANHELKKPSINLLFPTIDRVKNG ACGIQLSRHLLSLPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKVAQRRFESRLGRHSF GWTYCGSHNFSPAAWGQQLPPPKANPTEARAVSSGPRLHICNYELGIILIIPPSAMSKQI SGRRHEINDIVLPFVVPPPQYKLGDRPATSLAMREAMAEARILQSNDLVLDLSQDTDEDI PDEDDEHVIELSDCSPEEKEEEKIYAETLWEQVDSSQRPGWPVKLKSRCFG

Transcript Sequence

Transcript ID	Os04t0403400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:20009913:20015529:1 gene:Os04g0403400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tyrosyl-DNA phosphodiesterase family protein. (Os04t0403400-01)
Sequence	GTCATCTCCTCCTCCCCTCCCTTCCCATGGAGGCGGAGCCGCCGCCGGAGAACCGCCACG ACGACCACCACCCCTCCACTTCCGGCGGAGGCCTGGGCTACTTCCACCTCCGCCTCCTCT GCCCCGCCGCGCCACTCCTCCTCCTCCTCCGCTCCGACCGCCTCTACTCCCTCTCCCTCT CCCGCCGCCGCGGCCCCCGCCTCCGCCTCCTCGCCTCCCCTCGCCGCCGCCACGGCCGGC GACGGCGGGCCCTCCTCCTCAGCACATCGGGCTGCGCCCTCCGCCTCACCCACCGCTCCT CCAGCGCCGACGCCGTGCGCGTCAACGGCCGGCCCCTCCTCCGCGGTGGGTGCCCGGCCG ATCTGGCCGTCGGCGACGAGGTCTCGCTACTCCGCCGTGGCACCAGGTATGGATTCTTGG TGGAGAAATTCGTCTCCTGCGAACGGCCCAAATTGGCGGCGGCGGAGCCCTGCGGGGAGG TTCTTGTGCTGCGGGCCGAGTCGCTCCGGAAGCGGCTGAGGGCGATCTCGGAGAGTCATG ATCCTCTCTCTTTCTTGAGGGATTCACATTGTGTGGAGAACGGCAGCGATGATGTTAGGG TGAAAAAGGCGAGAGAAGAAGATGTTTTCTTGCCCCTGAACCTGAATGCTCCAATTGACC CTGTTGCCGTGGAGGGTTTACTGCGAGAAGACTGTAATCTTGGCCAGGGGAAATTGGAGC ACTGCACTGATTCAGCAATTGCAAAAAATGAAACTGATGAATTGATTCAACGGAGCAAGG GGTCCTGCGATGGCAATACAGAGCAGAAGGAATACAGCAATGAGAACACAGAGCAGCAGC ACAATGAGAATGAGGGTTGCTATTCAGATGGGAGCACATTCTTCCTGAATCGCCTCATTG GTATTGGGTCTGATATGAGGGTGGAGCAACGGAGTGGAGTGACACTTCCACAGCTTCTGC ATCCCATGGATAGCTTGGAGCGAGTATTTATCGCAACATTCACCTCCGATGTTTCCTGGT TTCTGGATTACTGTAAGGTTCCACAGAACCTGCCGGTGACGATAGCATGCCACAACAAGG AGAGGTGCTGGAGTGCGAGTCGCGAAAGTAGAACCGCTGCCCCTTTCGGAAGTTATCCTA ACCTACTATTAGTTTACCCCCAATTCCCAGAGGAGATAGCATTTGGAAAGGATAGGAAGA AGCAAGGAGTGGCATGCCACCATCCAAAGCTCTTAGTGCTACAGAGGAAAGACAGCATGC GTGTCATTGTCACTTCAGCTAACTTAGTACCTAGGCAGTGGCATCTCATAACAAACACGG TGTGGTGGCAAGATTTCCCTTGTAGGACATCCACAGATTATTCAGCTCTTTTTAGTAAAG TTGAGGAATCAAAATCAGATTTCGCTACTCAATTAGTTTCATTCATAGCATTCCTTATCA ATGAAGTTCCTAGCCAATCATATTGGATAAATGAGATAGCCAAGTATAATTTTGAAGGAG CTGCTGGATACCTCATTGCTTCCGTTCCAGGGATATATGCACGCAATCCTCACTATCTGG AGTCCAATTATTGCCTTTCAAGAAAACAGATATTACACACCAAATCGGCACATAGGATGT TTCTTGGTTCTGTCCAAACATCCGTAGTTGGTCTGTCCCATCGGTTTCATATACCATCTG ATGCTGGTTCTAAACTGAAAGCCCTGTCTGTACTTCTTAGTAAATGCCATGTGAACATGC ATGGAACTACAGAAGTGATCTTGAAGAGGAATACAAATATACCTGCAGATGCTAATGCTG TGAGTGTCCTAGTTGCTGATCTGGATAAATTTACCGAGGAAGATTCAGTCCATCTTGGTT TCCTGCCTAGAGAGGTTGCAAAGTGGGTATCTCCCCTCAGTGACTTGGGGTTCTTCACAT TTTCTGGATTTATCTACCCCAGAGAAGCCCTGGAAGCTGCATATGGAGCAACTAACACAA AAGTGCAGTTGCTTCTCTATGTATCAAAGGGTCCAGAGTTTTCTCAAATTTCAAGACTGA TCCAGGATGAACATTTTCCTCTTCTGTGCTCATTAGTAGCATCCTTAAAGCGGTCCCTTG GACTTTGGCGATTAGAAGAGGTGTTGTCACATTTCAAATGGCCTGAAACACTTGAGACTG ATTTTTTCTACAGTGCTTCATCCATTGGGACTTCAATTAATCCACAATTCATTGCAAGCT TTGCTTCAGCAGCTGGTAAACGATGTAATCAGGATTTGGACTCCGAAGAGTCTGATCCAG AGTGGGGTTGCTGGACAGCAAACCATGAGCTAAAGAAGCCATCTATCAATTTGTTGTTTC CAACAATTGACAGAGTGAAAAATGGGGCTTGTGGAATTCAGTTATCCAGGCATTTGCTTT CTCTTCCTGAGAGAACATGGCAAAGACTGAGATCTACTGGCATATTTCGTGACGCAATCC CACATCCATACGAGAGGATAGGGCATCCTATGCATGTCAAGGTTGCCCAGAGACGCTTCG AGTCTCGTCTAGGCAGACACTCATTCGGCTGGACTTACTGTGGGTCTCACAATTTCAGTC CAGCAGCCTGGGGACAACAACTTCCTCCACCAAAAGCAAATCCTACTGAAGCCAGAGCCG TTTCTTCTGGTCCGAGGCTACACATTTGCAACTATGAGCTCGGCATCATCCTCATTATTC CACCATCTGCCATGTCAAAGCAGATCAGTGGAAGGAGGCACGAGATCAATGACATTGTCC TGCCATTCGTCGTCCCTCCACCGCAATATAAGCTGGGCGATAGGCCTGCGACATCGTTAG CCATGCGAGAGGCCATGGCTGAAGCTAGAATTCTGCAGAGTAACGATTTAGTACTGGACT TGTCACAGGATACAGACGAGGATATACCTGATGAAGATGATGAGCATGTGATTGAGCTGT CTGATTGCTCCCCTGAAGAGAAGGAAGAGGAGAAGATCTACGCAGAGACGCTGTGGGAGC AAGTAGACTCTTCACAAAGACCAGGCTGGCCAGTGAAGTTGAAGTCCAGATGTTTCGGAT GACAAGTTCCTGTCATCGCATCTGATTTCAAGTGCAGGCAGCCGCACGAGATCTGACGAT TCTTTCTTACTGAAGATATTTGATTCGATTGTGATTTGTTAGAATTGTATTTTACAATGT GTAGTATGCATTCGTTGTCAATCTTTCTTGTAAGTATCTCAATACATCTATACTTGAACT TCACAGCGTATATAGTTGAAGTTTATTTCAAAAACTTTTATTGAGCTC