Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0402500-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:19941027:19942075:-1 gene:Os04g0402500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os04t0402500-00)
Sequence

ATGGCCGTGCAGGCGCAGCGCCTCGCCCAGGCTTTCCCTTACGACCTCCACGCGGCGGCG
AGCGGCGGCGCCCTGTTCCTGGACGAGCTCGCCGGCGAGTGCGCGCCGCCCATGGCGGCG
GTGGAAGGGATCGGGGGCGCGGTGGTGTTCGGCGGCGACAACGGCGAGTACGGGTTCGTG
GAGAGGAAGCGGCCGCGCGTGGCGGCGGGTCTGTTGGAGGACCAGCGCGCGGTCCTGGCG
CACGCGATGGCGGCGCCGCTGCAGGGGATCTTGCCCTTCGGGGATGTGGCGGGCAGGGCG
GCGTGCGCCGGCGCGGCGTCCACCAGCGGGAGGAGGATGGACGGTGCGGGCGGAATCTCG
CAGGGCCTTCTTTCGCAGCTCTACCACCATGGCGTGGAGATCGACGCGCTCGTTCGGCTC
GAGGCCGAGCGGATGCGCGCGGGGCTGGAGGAGGCGCAGCGGCGGCACGTCCGGGCGCTG
GTGGCGGCCGCGGCGCGCGCCACGACGGGGAGGGTGCGTGCGGCGGAGGCCGAGCTGGAG
CGCGCGCGCTGCCGCAACGCGGAGCTGGAGGAGAAGCTCCGCCAGGTGAGCGCGGAGGGG
CAGGCGTGGATGGGCGTCGCCAAGAGCCACGAGGCCGTCGCCGCCGGCCTCCGCGCCACG
CTCGACCAGCTCCTCCTCCAGTCCCCCTGCGCCGCCGCCGCCGCCGCCGCCTCCGCGGGG
GAAGGCGACGCCGAGGACGCCCACTCGTGCTGCTTCGAGACCCCCGCCGCCGCCGCCGAT
GTCGCGGTCTCCACGGCGACGTCGTGCAAGGCATGCCGTGTCGCGGAGGCGTCCGTGCTG
CTGCTCCCGTGCCGCCACCTGTGCCTGTGCGGCGCCTGCGAGGCCGCCGCCGACGCTTGC
CCCGTCTGCGCCGCCACCAAGAACGCCTCCGTCCATGTCCTCCTCTCCTGA

Peptide Sequence

PEP ID

Os04t0402500-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:19941027:19942075:-1 gene:Os04g0402500 transcript:Os04t0402500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os04t0402500-00)
Sequence

MAVQAQRLAQAFPYDLHAAASGGALFLDELAGECAPPMAAVEGIGGAVVFGGDNGEYGFV
ERKRPRVAAGLLEDQRAVLAHAMAAPLQGILPFGDVAGRAACAGAASTSGRRMDGAGGIS
QGLLSQLYHHGVEIDALVRLEAERMRAGLEEAQRRHVRALVAAAARATTGRVRAAEAELE
RARCRNAELEEKLRQVSAEGQAWMGVAKSHEAVAAGLRATLDQLLLQSPCAAAAAAASAG
EGDAEDAHSCCFETPAAAADVAVSTATSCKACRVAEASVLLLPCRHLCLCGACEAAADAC
PVCAATKNASVHVLLS

Transcript Sequence

Transcript ID

Os04t0402500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19941027:19942075:-1 gene:Os04g0402500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os04t0402500-00)
Sequence

ATGGCCGTGCAGGCGCAGCGCCTCGCCCAGGCTTTCCCTTACGACCTCCACGCGGCGGCG
AGCGGCGGCGCCCTGTTCCTGGACGAGCTCGCCGGCGAGTGCGCGCCGCCCATGGCGGCG
GTGGAAGGGATCGGGGGCGCGGTGGTGTTCGGCGGCGACAACGGCGAGTACGGGTTCGTG
GAGAGGAAGCGGCCGCGCGTGGCGGCGGGTCTGTTGGAGGACCAGCGCGCGGTCCTGGCG
CACGCGATGGCGGCGCCGCTGCAGGGGATCTTGCCCTTCGGGGATGTGGCGGGCAGGGCG
GCGTGCGCCGGCGCGGCGTCCACCAGCGGGAGGAGGATGGACGGTGCGGGCGGAATCTCG
CAGGGCCTTCTTTCGCAGCTCTACCACCATGGCGTGGAGATCGACGCGCTCGTTCGGCTC
GAGGCCGAGCGGATGCGCGCGGGGCTGGAGGAGGCGCAGCGGCGGCACGTCCGGGCGCTG
GTGGCGGCCGCGGCGCGCGCCACGACGGGGAGGGTGCGTGCGGCGGAGGCCGAGCTGGAG
CGCGCGCGCTGCCGCAACGCGGAGCTGGAGGAGAAGCTCCGCCAGGTGAGCGCGGAGGGG
CAGGCGTGGATGGGCGTCGCCAAGAGCCACGAGGCCGTCGCCGCCGGCCTCCGCGCCACG
CTCGACCAGCTCCTCCTCCAGTCCCCCTGCGCCGCCGCCGCCGCCGCCGCCTCCGCGGGG
GAAGGCGACGCCGAGGACGCCCACTCGTGCTGCTTCGAGACCCCCGCCGCCGCCGCCGAT
GTCGCGGTCTCCACGGCGACGTCGTGCAAGGCATGCCGTGTCGCGGAGGCGTCCGTGCTG
CTGCTCCCGTGCCGCCACCTGTGCCTGTGCGGCGCCTGCGAGGCCGCCGCCGACGCTTGC
CCCGTCTGCGCCGCCACCAAGAACGCCTCCGTCCATGTCCTCCTCTCCTGA