Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0402200-00
CDS Infomation	cds chromosome:IRGSP-1.0:4:19921005:19929376:-1 gene:Os04g0402200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA binding protein Rp120. (Os04t0402200-00)
Sequence	ATGGTGACCGGTGGCGCCGTGCCGGCGGCGGCGCCGGTGTGGAAGGGGAAAGTGAAGTCC GTCCCGTCGGGAGATACGGTGGTGATCATGGACACATCCAAGGCGGAGGAGGTCATCCCG CCGCCGGAGATGTCCGTCACGCTGTCGTGCATCATCGCGCCCAACCTGGCTCGACGCGGT GGGATGGACGAGCCTTTCGCATGGGAGAGCAGGGAGTACCTGAGGAGGCTCCTCATCGGA CAAGACGTCAGGTTTCGAGTAGAATACACTGCTTCTCCCTCGGGCCGCAAATTCGGCATG GTCTTCTTTGCTGAGAAGAATGTCGCTTGCATGGTAGTAGCTGCAGGTCTTGCTAAGGTG AAAGAGCAAGGGCAGAAGGGAGAAATAAGCCCGTATGTTGCTGAGTTGCTAAGGCTGGAG ACGATTGCCAGGGACCAAGGCTTAGGCCGTTGGAGCAAGCTTCCTGGCGCTCTTGAGTCG TCAATAAGAGATCTGCCACCATCGACAATTGGAGATGGCAGATCTTTCGATGCCAAGGGT TTCGTTGCTGAAAACAAAGGGAAGAGCTTGGAAGCCATTGTAGAGCATGTTCGCGATGGA AGTACTATTCGTGTGCACTTGATTCCCAGTTTCCTTTATGTCCAAGTTTACGTTGCTGGC GTCCAGGCCCCATCCATGGGAAGACGAGCAACTCCTCCCCCAAATGCTCAAGCTGGAGTT GGCAATGGCGCAGCAAATGGAGAAGCTTCCACTACTCCAGCACCAATGGCAGCAGCACAG AAACTATTGGCATCAGCTGACATTTATTCTGAAGTCCCACCAGACAGGTTTGGACAAGAA GCTAAGCACTTCACCGAGACACGGGTGCTTAACAGAGAAGTGCGGATTGTGATGGAGGGT ACAGACAATTTCAACAACATATTTGGTTCAGTTTATTATTCTGATGGGGATGTTGTAAAG GACTTGGCACTTGATCTGGTTCAAAATGGACTCGCAAAGTATGTTGAATGGAGTGCAAAT GTGCTTGATCCTCAACTTAAGACAAAGTTGAGGAATGCTGATCTTCAGGTTAAGAAGGAA CAGTTAAGAATCTGGACTGGATTTAAGCCCCCGGTGACAAACACAAAGCCAATTCACAAC CAAAAGTTCACAGGAAAAGTGATAGAGGTTGTGAACGGGTACTGCCTAGTCATCGCTGAT GACGCTGAACCTTATGGCAGTCCTTCAGCAGAACGCCGAGTTAATCTTTCAAGCATCAGA CCCCCCAAGTTTGAAAAGCCTTCAGAGGAGAACAAATCCTCTGAACAATTTGCTCGCACA GCAAAGGAATTCCTGCGCACAAGACTGATTGGAAAACAAGTCAACGTCTCAATGGAGTAC TCGAGGAGGATCAACATTGCAGACGGACAGATTGCTGGCCCGAGAACTAACTCGACTGAA ACCAGAGTTTTGGAGTACGGGTCGGTGTTCCTTCCCAGCTCATCGCATGCTGATGGAGAA ACCGCTACTAGTAGCTCGGACAGCAGCAATAATCAGCTCGGGATCAACGTTGCGGCGCTG CTGGTCTCGCGCGGATTAGCCGACATCACCAGGCACCGTGACTACGAGGACAGGTCGCAT CACTACGATGCTCTCATAGCTGCCCATGCGCGAGCTGAGAAGACGAAGAAAGGCTACCAC TCCAAGAAGGAGTGCCCTCCTATTCATATGACAGATTTGACGAGGGTACCCAAAAAGGCG AAGGAATTCCTTCACCTGTTGCAACGCAGCAGGAGGCATTCCGCAATTGTTGAGTACGTT TTCAGCGGCCATCGTTTCAAAGTGACGATCCCTAAAGAGACTTGCACCATTGCATTCGCG CTTTCTGGTGTTCGGTGCCCCGGTAGAGATGAGCCCTACTCTGATGAGGCCATCACAATG ATGAGGAGAAGGATATTACAACGGAATGTCGAGATTGAGATCAACACAGTTGATAGAACT GGAACATTCTTAGGTTCCTTATGGGAATCTAATATCAATGTGGCTTCGGTTCTTTTGGAG GCTGGTCTTGCTAAGATCAGCTCATTTGCAGTGGATAAGATGCCAGATGCTCAGGTTCTC TTAAAGACTGAAAAAATTGCAAAGCAAAAGAAATTGAAGGTATGGGAGAACTACGAGGAA GTTGAAGTTTCCAACGTCTCTCTTTATGATAATAAAGAGACTCTAAAGGTTATTGTCACT GAAGTGCTAGGTGCTGGAATGTTTTATGTCCAAGCACTTGCTGATGAACATGTGGAGTTC GTACGTCATCAGCTTGCTTCTTTAGACATTAAGGATGATCCAGCTGAAGCTTTAGAAGTG AAAGAGCTGGAAACTTCAAAAGAGGTTGCTACTTTGACAAAAGATTTACCTGAAACTTTG GATGCCGAAGACCCATCTTCTGATGTGGCTAAGGATGAATCAGTAACTTCTAAGGATATA GACCCATTACCAGATGATTCAAACACAGCTCCATTTACTCCTATGAAGGGAGAAATGGTG CTTGCATTGTTCCGCTGCGACAATTCATGGAACAGAGCCATGATTATAGGTGAGTGTCAG GGAGTTGAAGGACCTGAGTTTGAAGTATTTTACATTGACTATGGAAACCAAGAACTTGTT CCTCACAGTTGCCTGAGACCTATCAATCTATCCATTTCCTCTATTCCTCCCCTTGCAAAG CTGTGCAGCCTTGCCTTTGTGAAGGTGCCCAGTCTAAATGACTATCTTGGGCAAGAGGCA GCTATGTATCTGAACAGTATCTTGCTTGACAATGGGAGAGAATTTGAGGCTATTGTCGAA GAGCGAGATGCTGCTTCGGGAGGGAAATTGCAGGGTCAGGGAACCGGAGAAATCCTCGGC GTGACTCTACTCGATAGTGAGACCGACAATAGCATCAATGCTGAGATGCTAGAGAGAGGG TATGGTCAACTTGAGAGGAGGAGATGGGACTCGAGGGAGAGGAGGGCAGCCATCAAGAAG CTTGAGGAATTCCAGGAGGTAGCAAGGAAGGAGCAGCTAGGCGTCTGGTGCCCAAAGAAT GCAAGGAAGCAGGGCATGGATGAAAACGAGTACCCTGTCCTGGCCAGAGCACCACCTCCC CCAAAGAAGGGATATGACCTGATCAAGTTCATTGCGTCCCGGTCCGACTAA

Peptide Sequence

PEP ID	Os04t0402200-00
PEP Infomation	pep chromosome:IRGSP-1.0:4:19921005:19929376:-1 gene:Os04g0402200 transcript:Os04t0402200-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA binding protein Rp120. (Os04t0402200-00)
Sequence	MVTGGAVPAAAPVWKGKVKSVPSGDTVVIMDTSKAEEVIPPPEMSVTLSCIIAPNLARRG GMDEPFAWESREYLRRLLIGQDVRFRVEYTASPSGRKFGMVFFAEKNVACMVVAAGLAKV KEQGQKGEISPYVAELLRLETIARDQGLGRWSKLPGALESSIRDLPPSTIGDGRSFDAKG FVAENKGKSLEAIVEHVRDGSTIRVHLIPSFLYVQVYVAGVQAPSMGRRATPPPNAQAGV GNGAANGEASTTPAPMAAAQKLLASADIYSEVPPDRFGQEAKHFTETRVLNREVRIVMEG TDNFNNIFGSVYYSDGDVVKDLALDLVQNGLAKYVEWSANVLDPQLKTKLRNADLQVKKE QLRIWTGFKPPVTNTKPIHNQKFTGKVIEVVNGYCLVIADDAEPYGSPSAERRVNLSSIR PPKFEKPSEENKSSEQFARTAKEFLRTRLIGKQVNVSMEYSRRINIADGQIAGPRTNSTE TRVLEYGSVFLPSSSHADGETATSSSDSSNNQLGINVAALLVSRGLADITRHRDYEDRSH HYDALIAAHARAEKTKKGYHSKKECPPIHMTDLTRVPKKAKEFLHLLQRSRRHSAIVEYV FSGHRFKVTIPKETCTIAFALSGVRCPGRDEPYSDEAITMMRRRILQRNVEIEINTVDRT GTFLGSLWESNINVASVLLEAGLAKISSFAVDKMPDAQVLLKTEKIAKQKKLKVWENYEE VEVSNVSLYDNKETLKVIVTEVLGAGMFYVQALADEHVEFVRHQLASLDIKDDPAEALEV KELETSKEVATLTKDLPETLDAEDPSSDVAKDESVTSKDIDPLPDDSNTAPFTPMKGEMV LALFRCDNSWNRAMIIGECQGVEGPEFEVFYIDYGNQELVPHSCLRPINLSISSIPPLAK LCSLAFVKVPSLNDYLGQEAAMYLNSILLDNGREFEAIVEERDAASGGKLQGQGTGEILG VTLLDSETDNSINAEMLERGYGQLERRRWDSRERRAAIKKLEEFQEVARKEQLGVWCPKN ARKQGMDENEYPVLARAPPPPKKGYDLIKFIASRSD

Transcript Sequence

Transcript ID	Os04t0402200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:19921005:19929376:-1 gene:Os04g0402200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RNA binding protein Rp120. (Os04t0402200-00)
Sequence	ATGGTGACCGGTGGCGCCGTGCCGGCGGCGGCGCCGGTGTGGAAGGGGAAAGTGAAGTCC GTCCCGTCGGGAGATACGGTGGTGATCATGGACACATCCAAGGCGGAGGAGGTCATCCCG CCGCCGGAGATGTCCGTCACGCTGTCGTGCATCATCGCGCCCAACCTGGCTCGACGCGGT GGGATGGACGAGCCTTTCGCATGGGAGAGCAGGGAGTACCTGAGGAGGCTCCTCATCGGA CAAGACGTCAGGTTTCGAGTAGAATACACTGCTTCTCCCTCGGGCCGCAAATTCGGCATG GTCTTCTTTGCTGAGAAGAATGTCGCTTGCATGGTAGTAGCTGCAGGTCTTGCTAAGGTG AAAGAGCAAGGGCAGAAGGGAGAAATAAGCCCGTATGTTGCTGAGTTGCTAAGGCTGGAG ACGATTGCCAGGGACCAAGGCTTAGGCCGTTGGAGCAAGCTTCCTGGCGCTCTTGAGTCG TCAATAAGAGATCTGCCACCATCGACAATTGGAGATGGCAGATCTTTCGATGCCAAGGGT TTCGTTGCTGAAAACAAAGGGAAGAGCTTGGAAGCCATTGTAGAGCATGTTCGCGATGGA AGTACTATTCGTGTGCACTTGATTCCCAGTTTCCTTTATGTCCAAGTTTACGTTGCTGGC GTCCAGGCCCCATCCATGGGAAGACGAGCAACTCCTCCCCCAAATGCTCAAGCTGGAGTT GGCAATGGCGCAGCAAATGGAGAAGCTTCCACTACTCCAGCACCAATGGCAGCAGCACAG AAACTATTGGCATCAGCTGACATTTATTCTGAAGTCCCACCAGACAGGTTTGGACAAGAA GCTAAGCACTTCACCGAGACACGGGTGCTTAACAGAGAAGTGCGGATTGTGATGGAGGGT ACAGACAATTTCAACAACATATTTGGTTCAGTTTATTATTCTGATGGGGATGTTGTAAAG GACTTGGCACTTGATCTGGTTCAAAATGGACTCGCAAAGTATGTTGAATGGAGTGCAAAT GTGCTTGATCCTCAACTTAAGACAAAGTTGAGGAATGCTGATCTTCAGGTTAAGAAGGAA CAGTTAAGAATCTGGACTGGATTTAAGCCCCCGGTGACAAACACAAAGCCAATTCACAAC CAAAAGTTCACAGGAAAAGTGATAGAGGTTGTGAACGGGTACTGCCTAGTCATCGCTGAT GACGCTGAACCTTATGGCAGTCCTTCAGCAGAACGCCGAGTTAATCTTTCAAGCATCAGA CCCCCCAAGTTTGAAAAGCCTTCAGAGGAGAACAAATCCTCTGAACAATTTGCTCGCACA GCAAAGGAATTCCTGCGCACAAGACTGATTGGAAAACAAGTCAACGTCTCAATGGAGTAC TCGAGGAGGATCAACATTGCAGACGGACAGATTGCTGGCCCGAGAACTAACTCGACTGAA ACCAGAGTTTTGGAGTACGGGTCGGTGTTCCTTCCCAGCTCATCGCATGCTGATGGAGAA ACCGCTACTAGTAGCTCGGACAGCAGCAATAATCAGCTCGGGATCAACGTTGCGGCGCTG CTGGTCTCGCGCGGATTAGCCGACATCACCAGGCACCGTGACTACGAGGACAGGTCGCAT CACTACGATGCTCTCATAGCTGCCCATGCGCGAGCTGAGAAGACGAAGAAAGGCTACCAC TCCAAGAAGGAGTGCCCTCCTATTCATATGACAGATTTGACGAGGGTACCCAAAAAGGCG AAGGAATTCCTTCACCTGTTGCAACGCAGCAGGAGGCATTCCGCAATTGTTGAGTACGTT TTCAGCGGCCATCGTTTCAAAGTGACGATCCCTAAAGAGACTTGCACCATTGCATTCGCG CTTTCTGGTGTTCGGTGCCCCGGTAGAGATGAGCCCTACTCTGATGAGGCCATCACAATG ATGAGGAGAAGGATATTACAACGGAATGTCGAGATTGAGATCAACACAGTTGATAGAACT GGAACATTCTTAGGTTCCTTATGGGAATCTAATATCAATGTGGCTTCGGTTCTTTTGGAG GCTGGTCTTGCTAAGATCAGCTCATTTGCAGTGGATAAGATGCCAGATGCTCAGGTTCTC TTAAAGACTGAAAAAATTGCAAAGCAAAAGAAATTGAAGGTATGGGAGAACTACGAGGAA GTTGAAGTTTCCAACGTCTCTCTTTATGATAATAAAGAGACTCTAAAGGTTATTGTCACT GAAGTGCTAGGTGCTGGAATGTTTTATGTCCAAGCACTTGCTGATGAACATGTGGAGTTC GTACGTCATCAGCTTGCTTCTTTAGACATTAAGGATGATCCAGCTGAAGCTTTAGAAGTG AAAGAGCTGGAAACTTCAAAAGAGGTTGCTACTTTGACAAAAGATTTACCTGAAACTTTG GATGCCGAAGACCCATCTTCTGATGTGGCTAAGGATGAATCAGTAACTTCTAAGGATATA GACCCATTACCAGATGATTCAAACACAGCTCCATTTACTCCTATGAAGGGAGAAATGGTG CTTGCATTGTTCCGCTGCGACAATTCATGGAACAGAGCCATGATTATAGGTGAGTGTCAG GGAGTTGAAGGACCTGAGTTTGAAGTATTTTACATTGACTATGGAAACCAAGAACTTGTT CCTCACAGTTGCCTGAGACCTATCAATCTATCCATTTCCTCTATTCCTCCCCTTGCAAAG CTGTGCAGCCTTGCCTTTGTGAAGGTGCCCAGTCTAAATGACTATCTTGGGCAAGAGGCA GCTATGTATCTGAACAGTATCTTGCTTGACAATGGGAGAGAATTTGAGGCTATTGTCGAA GAGCGAGATGCTGCTTCGGGAGGGAAATTGCAGGGTCAGGGAACCGGAGAAATCCTCGGC GTGACTCTACTCGATAGTGAGACCGACAATAGCATCAATGCTGAGATGCTAGAGAGAGGG TATGGTCAACTTGAGAGGAGGAGATGGGACTCGAGGGAGAGGAGGGCAGCCATCAAGAAG CTTGAGGAATTCCAGGAGGTAGCAAGGAAGGAGCAGCTAGGCGTCTGGTGCCCAAAGAAT GCAAGGAAGCAGGGCATGGATGAAAACGAGTACCCTGTCCTGGCCAGAGCACCACCTCCC CCAAAGAAGGGATATGACCTGATCAAGTTCATTGCGTCCCGGTCCGACTAA