Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0402100-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:19913312:19916747:-1 gene:Os04g0402100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALNEXIN description:Similar to Calnexin (Fragment). (Os04t0402100-01);Similar to calnexin. (Os04t0402100-02)
Sequence	ATGGTGGGTGGGCGCGCGCTCCTGCCGCTGCTTCTGCTCTCCGCGCTGCTCGTCCAGATC CGCGCCTCCGATCCGCTGTTCTATGAGCCGTTCGACGAGAGCTTCGAGGGGAGGTGGGTT CTCTCCGGGAAGGACGACTACAAAGGTGTATGGAAGCACGAAAAGAGTGATGGACATGAA GACTATGGCCTGCTTGTTAGTGAGAAGGCCAAGAAATATGCCATAATCAAGGAGCTTGAT GAGCCTGTTACTTTGAAGGATGGGACTGTTGTCCTGCAGTTTGAAGTGAGGCTTCAGAAT GGCCTTGAGTGTGGAGGTGCATATCTTAAGTACATTCGTCCTCAGGATGCTGCATGGGAT GCCAAGGAGTTTGATAATGAGACTCCTTACACTATTATGTTTGGTCCTGACAAATGTGGA TCAACTAACAAGGTGCATTTCATCCTTAAGCACAAGAACCCCAAGACTGGCAAGTATGTT GAACACCACCTCAAGTTCCCACCTTCTGTCCCATATGATAAGCTCTCTCATGTCTACACG GCTATCTTGAAGCCTGATAATGAGGTGAGAATTTTGGTTGATGGGGAAGAGAAGAAGAAG GCAAACTTCCTTTCTGCTGATGATTTTGAGCCATCACTTATCCCATCCAAGACCATTCCT GATCCTGATGACAAAAAGCCAGAAGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGAT GCTGTGAAGCCTGATGACTGGGATGAGGATGCCCCCATGGAAATTGAGGACGAAGAGGCC ACAAAGCCAGAGGGGTGGCTGGATGATGAGCCAGAGGAAATTGATGATCCGGAGGCTAAC AAGCCTGAAGACTGGGATGATGAGGAGGATGGAGAATGGGAAGCACCAAAGATTGACAAC CCCAAGTGTGAAGAGGCTCCTGGTTGTGGTGAGTGGAAGAGGCCGATGAAGCAGAACCCT GCTTACAAGGGCAAGTGGCATGCGCCTCTTATCGACAACCCCAACTACAAAGGAATCTGG AAGCCCCAAGAGATCCCCAACCCTGAGTACTTCGAGCTTGACAAGCCTGACTCTGATCCG ATTGCCGCTATTGGGATTGAGATCTGGACGATGCAAGATGGCATCCTGTTTGACAACATT TTGATCGCTGATGATGAGAAGGTTGCCACTTCTATCCTGGAGAAGTCTTGGAAGCCCAAG TACGAAGTAGAGAAGGAGAAGGAGAAGGCTGAGGAGGCAGCAGCGGCAGCAGGTGATGGT CTTTCTGAGTTCCAGAAGAAGATCTTTGACGTTCTGTACAAACTCGCTGACATTCCATTC TTGGAACCCTACAAGACTAAGATCATTGATGTAATTGAGAAGGGAGAGAAGCAGCCCAAC ATCACCATTGGAATTCTGGTCTCCATCGTTGTCGTCTTTGTGACTGTGCTCTTCAGGATC CTGTTCGGCGGCAAGAAGCCAGCGGCTCCTGTGAAGCCCGTAGCCGAGGTCAAAAAACCA AAGTCTACCGAGTCCGAAGCAGCTGGAAGCAGCGGTGGCAAGGAGGACGAGAAGGAAGAG GAAGAGAAGGATGGAGCTGCTGCCCCACGCCGGAGGTCCCGAAGGGAGACATGA

Peptide Sequence

PEP ID	Os04t0402100-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:19913312:19916747:-1 gene:Os04g0402100 transcript:Os04t0402100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALNEXIN description:Similar to Calnexin (Fragment). (Os04t0402100-01);Similar to calnexin. (Os04t0402100-02)
Sequence	MVGGRALLPLLLLSALLVQIRASDPLFYEPFDESFEGRWVLSGKDDYKGVWKHEKSDGHE DYGLLVSEKAKKYAIIKELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWD AKEFDNETPYTIMFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYT AILKPDNEVRILVDGEEKKKANFLSADDFEPSLIPSKTIPDPDDKKPEDWDERAKIPDPD AVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDN PKCEEAPGCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYFELDKPDSDP IAAIGIEIWTMQDGILFDNILIADDEKVATSILEKSWKPKYEVEKEKEKAEEAAAAAGDG LSEFQKKIFDVLYKLADIPFLEPYKTKIIDVIEKGEKQPNITIGILVSIVVVFVTVLFRI LFGGKKPAAPVKPVAEVKKPKSTESEAAGSSGGKEDEKEEEEKDGAAAPRRRSRRET

Transcript Sequence

Transcript ID	Os04t0402100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:19913312:19916747:-1 gene:Os04g0402100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALNEXIN description:Similar to Calnexin (Fragment). (Os04t0402100-01);Similar to calnexin. (Os04t0402100-02)
Sequence	AAGCCGCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGCTCTGTTCTTCTT CTCCTCTCTGGAAATTTCTGGATCTCGCGAGAGATCGGGAGGACGATGGTGGGTGGGCGC GCGCTCCTGCCGCTGCTTCTGCTCTCCGCGCTGCTCGTCCAGATCCGCGCCTCCGATCCG CTGTTCTATGAGCCGTTCGACGAGAGCTTCGAGGGGAGGTGGGTTCTCTCCGGGAAGGAC GACTACAAAGGTGTATGGAAGCACGAAAAGAGTGATGGACATGAAGACTATGGCCTGCTT GTTAGTGAGAAGGCCAAGAAATATGCCATAATCAAGGAGCTTGATGAGCCTGTTACTTTG AAGGATGGGACTGTTGTCCTGCAGTTTGAAGTGAGGCTTCAGAATGGCCTTGAGTGTGGA GGTGCATATCTTAAGTACATTCGTCCTCAGGATGCTGCATGGGATGCCAAGGAGTTTGAT AATGAGACTCCTTACACTATTATGTTTGGTCCTGACAAATGTGGATCAACTAACAAGGTG CATTTCATCCTTAAGCACAAGAACCCCAAGACTGGCAAGTATGTTGAACACCACCTCAAG TTCCCACCTTCTGTCCCATATGATAAGCTCTCTCATGTCTACACGGCTATCTTGAAGCCT GATAATGAGGTGAGAATTTTGGTTGATGGGGAAGAGAAGAAGAAGGCAAACTTCCTTTCT GCTGATGATTTTGAGCCATCACTTATCCCATCCAAGACCATTCCTGATCCTGATGACAAA AAGCCAGAAGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGATGCTGTGAAGCCTGAT GACTGGGATGAGGATGCCCCCATGGAAATTGAGGACGAAGAGGCCACAAAGCCAGAGGGG TGGCTGGATGATGAGCCAGAGGAAATTGATGATCCGGAGGCTAACAAGCCTGAAGACTGG GATGATGAGGAGGATGGAGAATGGGAAGCACCAAAGATTGACAACCCCAAGTGTGAAGAG GCTCCTGGTTGTGGTGAGTGGAAGAGGCCGATGAAGCAGAACCCTGCTTACAAGGGCAAG TGGCATGCGCCTCTTATCGACAACCCCAACTACAAAGGAATCTGGAAGCCCCAAGAGATC CCCAACCCTGAGTACTTCGAGCTTGACAAGCCTGACTCTGATCCGATTGCCGCTATTGGG ATTGAGATCTGGACGATGCAAGATGGCATCCTGTTTGACAACATTTTGATCGCTGATGAT GAGAAGGTTGCCACTTCTATCCTGGAGAAGTCTTGGAAGCCCAAGTACGAAGTAGAGAAG GAGAAGGAGAAGGCTGAGGAGGCAGCAGCGGCAGCAGGTGATGGTCTTTCTGAGTTCCAG AAGAAGATCTTTGACGTTCTGTACAAACTCGCTGACATTCCATTCTTGGAACCCTACAAG ACTAAGATCATTGATGTAATTGAGAAGGGAGAGAAGCAGCCCAACATCACCATTGGAATT CTGGTCTCCATCGTTGTCGTCTTTGTGACTGTGCTCTTCAGGATCCTGTTCGGCGGCAAG AAGCCAGCGGCTCCTGTGAAGCCCGTAGCCGAGGTCAAAAAACCAAAGTCTACCGAGTCC GAAGCAGCTGGAAGCAGCGGTGGCAAGGAGGACGAGAAGGAAGAGGAAGAGAAGGATGGA GCTGCTGCCCCACGCCGGAGGTCCCGAAGGGAGACATGAGACACAACATAAGCCTTTGAT TTTGACGTCTTATCGCGGCCATTTTGGCGGCTGCTTTTTTCCTTTTTCGAGAACTTGGGC TTTTATGTTTTTTGAGTGTATAATAGGAGATTCATGTCGCCTATGCTCCCTGCAGATGAT GATTTGGTACCCCTGCTTAAATGGTTAGAACTTCACGGACAGTAGAAGTTAGTCATGTTG GGTTTATTTGTGTGCTGTGCCTGACATATAATCACTTTCTTGATCACCTAGTGATTATTT TCTCGTAGATAGTTGAAACATCAAGAGTCTCTTTCAGAAGTGTGAGGTTCAGTGCAAGCT AGTTATTATCTTTGCTGC