Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0401800-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:19893402:19896710:-1 gene:Os04g0401800 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair metallo-beta-lactamase domain containing protein. (Os04t0401800-01)
Sequence

ATGGGCACCGACATCGCCGGCGACGGCGAACCCAGCTCGCCCCCGCCCCTGCCCGTCCCG
GACGGGCTGGACGACAACGGCTTCCCCCTCCCCTCCTCTCCCACTGCCGCCACCGCCGCC
ACCAGCTTCGCCGACGACTTCTACCGTAGCGGCACCGACTGGTCCTCCCTGCTCGCCGCC
CCCTCGCCGCCGCCGTCGTCCGAGGAGTCCGGGAAGAACAAGTCCGGCGACTCCCTCGTC
CAGAGGAGCCTCTTCCAGGCGTGGGGAATCGACAGGCGGCCGCGGCGGGAGGAGGAGGTC
GCGGGGGTCGCGGGCGGGGCTGGGGCTGGGGCTTCGTCCGCTCCTTCTGGCTCATGGCCC
GGGAGGAAGCGGCGGCGAGGAGGCGAGGTGGAGGCCGCGGCGGACAGGAAGCCTCTCGCC
TGCCCCTTCTACAAGAAGATTCCCGGAACTCCATTCACGGTGGATGCATTTCGGTATGGA
GCGGTTGAGGGTTGCAATGCCTATTTCCTCAGCCATTTTCACCATGATCATTATGGTGGA
TTAACCAAGAAATGGTGCCATGGTCCTATCTACTGTACTGCCCTAACTGCTCGCTTGGTT
AAGATGTGCTTGTCAGTAAATCCCGAGTATATTTGTCCGTTGGAGCTTGATAAGGAGTAT
GTTATAGAGGGAGTTTCAGTGACCTTGTTAGAGGCCAACCATTGTCCTGGTGCAGCACTA
ATTCACTTCCGTCTTGGTGATGGGAAGAAATATCTCCATACTGGGGATTTTAGAGCATCA
AAATCAATGCAGTTGTATCCACTTCTCCAAAGAGGCCAGATAAATTTGCTTTACCTGGAC
ACAACTTATTGTAATCCAAAATACAAGTTCCCTCCCAAGGAAGATGTTATTGATTTTGCT
GTGAGGACAGCTAAAAGATATCTACAGAAGGAACCAAAAACACTCATTGTTGTTGGAGCA
TATAGCATTGGGAAAGAAAATGTATATCTAGCGATTTCGAAAGCTTTACAGGTTCCTATC
TACACTGATGCATCAAGAAGGCGCATTCTTCACGCATTTGGCTGGTCGGATTTATCCAAA
ATGATATGTTCAGACAGTCAAAGTTCATCACTTCATGTTCTGCCCCTTTCTTCTTTACGA
CATGAGAACTTGCAGAAGTATTTGGAGACTCTTAAACAAAGATTTCTAGCTGTGCTGGCT
TTTCGACCAACAGGTTGGACTTTCTCTGAGGAAACTGGAAATCAGCTTGACCTAATTAAA
CCTAGCTCCAGGGGCAAAATTACTATCTATGGTGTTCCTTATAGCGAGCACTCAAGTTTC
AGTGAGCTTAGAGAATTTGTGATGTTTCTGAGACCCCAAAAGGTAATTCCCACTGTTAAT
GTTGGGAACGCGGCAAGTCGAGACAAAATGCAAGCACATTTTCGGGAATGGCTGAAGGGC
TTGTGA

Peptide Sequence

PEP ID

Os04t0401800-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:19893402:19896710:-1 gene:Os04g0401800 transcript:Os04t0401800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair metallo-beta-lactamase domain containing protein. (Os04t0401800-01)
Sequence

MGTDIAGDGEPSSPPPLPVPDGLDDNGFPLPSSPTAATAATSFADDFYRSGTDWSSLLAA
PSPPPSSEESGKNKSGDSLVQRSLFQAWGIDRRPRREEEVAGVAGGAGAGASSAPSGSWP
GRKRRRGGEVEAAADRKPLACPFYKKIPGTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGG
LTKKWCHGPIYCTALTARLVKMCLSVNPEYICPLELDKEYVIEGVSVTLLEANHCPGAAL
IHFRLGDGKKYLHTGDFRASKSMQLYPLLQRGQINLLYLDTTYCNPKYKFPPKEDVIDFA
VRTAKRYLQKEPKTLIVVGAYSIGKENVYLAISKALQVPIYTDASRRRILHAFGWSDLSK
MICSDSQSSSLHVLPLSSLRHENLQKYLETLKQRFLAVLAFRPTGWTFSEETGNQLDLIK
PSSRGKITIYGVPYSEHSSFSELREFVMFLRPQKVIPTVNVGNAASRDKMQAHFREWLKG
L

Transcript Sequence

Transcript ID

Os04t0401800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19893402:19896710:-1 gene:Os04g0401800 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair metallo-beta-lactamase domain containing protein. (Os04t0401800-01)
Sequence

GCATCCTCCCGCCGCCGCCCATTTCGAACCCTCCGATGGGCACCGACATCGCCGGCGACG
GCGAACCCAGCTCGCCCCCGCCCCTGCCCGTCCCGGACGGGCTGGACGACAACGGCTTCC
CCCTCCCCTCCTCTCCCACTGCCGCCACCGCCGCCACCAGCTTCGCCGACGACTTCTACC
GTAGCGGCACCGACTGGTCCTCCCTGCTCGCCGCCCCCTCGCCGCCGCCGTCGTCCGAGG
AGTCCGGGAAGAACAAGTCCGGCGACTCCCTCGTCCAGAGGAGCCTCTTCCAGGCGTGGG
GAATCGACAGGCGGCCGCGGCGGGAGGAGGAGGTCGCGGGGGTCGCGGGCGGGGCTGGGG
CTGGGGCTTCGTCCGCTCCTTCTGGCTCATGGCCCGGGAGGAAGCGGCGGCGAGGAGGCG
AGGTGGAGGCCGCGGCGGACAGGAAGCCTCTCGCCTGCCCCTTCTACAAGAAGATTCCCG
GAACTCCATTCACGGTGGATGCATTTCGGTATGGAGCGGTTGAGGGTTGCAATGCCTATT
TCCTCAGCCATTTTCACCATGATCATTATGGTGGATTAACCAAGAAATGGTGCCATGGTC
CTATCTACTGTACTGCCCTAACTGCTCGCTTGGTTAAGATGTGCTTGTCAGTAAATCCCG
AGTATATTTGTCCGTTGGAGCTTGATAAGGAGTATGTTATAGAGGGAGTTTCAGTGACCT
TGTTAGAGGCCAACCATTGTCCTGGTGCAGCACTAATTCACTTCCGTCTTGGTGATGGGA
AGAAATATCTCCATACTGGGGATTTTAGAGCATCAAAATCAATGCAGTTGTATCCACTTC
TCCAAAGAGGCCAGATAAATTTGCTTTACCTGGACACAACTTATTGTAATCCAAAATACA
AGTTCCCTCCCAAGGAAGATGTTATTGATTTTGCTGTGAGGACAGCTAAAAGATATCTAC
AGAAGGAACCAAAAACACTCATTGTTGTTGGAGCATATAGCATTGGGAAAGAAAATGTAT
ATCTAGCGATTTCGAAAGCTTTACAGGTTCCTATCTACACTGATGCATCAAGAAGGCGCA
TTCTTCACGCATTTGGCTGGTCGGATTTATCCAAAATGATATGTTCAGACAGTCAAAGTT
CATCACTTCATGTTCTGCCCCTTTCTTCTTTACGACATGAGAACTTGCAGAAGTATTTGG
AGACTCTTAAACAAAGATTTCTAGCTGTGCTGGCTTTTCGACCAACAGGTTGGACTTTCT
CTGAGGAAACTGGAAATCAGCTTGACCTAATTAAACCTAGCTCCAGGGGCAAAATTACTA
TCTATGGTGTTCCTTATAGCGAGCACTCAAGTTTCAGTGAGCTTAGAGAATTTGTGATGT
TTCTGAGACCCCAAAAGGTAATTCCCACTGTTAATGTTGGGAACGCGGCAAGTCGAGACA
AAATGCAAGCACATTTTCGGGAATGGCTGAAGGGCTTGTGAGAGATGAAGCCTAATCACT
TTATCCATGTCAACCTTAGCTGTTGGATATTCAGTGTGACACGACGATTGTGCCTCCAGT
CCCGAAGTCTGAGGAGCAGCCAAGATCTTCAGTGAAGGTGAAGATCGGTATACTCTGTTC
TGATGCTGTAAGTTAGGAATTTCCAAAGTTGTACTGGTTGTTAAAACTCTGTTGTATATT
CAGTGAAATAGTAACATTACAGACTCCAGTTATTGTTCAACCAAATACATTGCTCTGATA
CTATTTCAACAGGCGTCATTGCAAAGCATGTAGCCACACTGGGTACAGCACTAAGGTTTC
TTAGATGTAGTTGAGATTTAACAGTGCCTTCAAAATTTCATGCACATGTGTGCTTATGGA
CCC