Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0400600-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:19819412:19820288:-1 gene:Os04g0400600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113L04.4 protein. (Os04t0400600-00)
Sequence

GATCAAGAGTTTCTGAATTCTTTTTCTGAATGTACCTGTGTTGATTTGTCTGTCTGTCTG
ATCGATGCAGGCAAGCATTGCATCGAGAAGATCGAGTACGAGGGCGAGAAGGTGATCGTC
CGGGGAAGCTTCTGCGCGGAGGAGCTCCGCACGTGCATCTGGCGCAAGGCCGGCTGCAAG
ATCATCGTCAGCATCGTCATCGTCGAGGTGTGGCCGCCGCCGCCGCCGGCGGTCACCGTC
AATGTCAAGGCCGACGTCACCGCCACGGCCGTCGCCGCGGCGGAGGCGGCGGCGAAGGCC
ACCGCGGAGGCCTTCATCATGGTGGAGAGGGAGCACTGCAACAAGCAGCCGCCGGCGTGC
AAGATGGTGCCGTTCCCGTACCCGGTGCCCTACCCGGTGCCGTGCAACAAGACGGCGACG
GACAAGCCTAAGCCGTGCTGCGGCGGCTGCGTGCCTCCGCCGCCGCGGTGCAAGTGCGGC
GTCGACGGCTGCGGCGGCGGCTGTTCAGGAGGACACGGCGGGGAATGCGGGGGCGGCGGC
GGCGGCTGCAAGAAGCCCTGCTGTTCGCCGCCGCCGTGCCCGTGGCAGCCCGTCTGCCCG
CCGCCGCCGTGCGGCGGCGGCGGCTACGTCGTCTATGAGCAGCCGGAGGGATGCTCTGTC
ATGTGA

Peptide Sequence

PEP ID

Os04t0400600-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:19819412:19820288:-1 gene:Os04g0400600 transcript:Os04t0400600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113L04.4 protein. (Os04t0400600-00)
Sequence

DQEFLNSFSECTCVDLSVCLIDAGKHCIEKIEYEGEKVIVRGSFCAEELRTCIWRKAGCK
IIVSIVIVEVWPPPPPAVTVNVKADVTATAVAAAEAAAKATAEAFIMVEREHCNKQPPAC
KMVPFPYPVPYPVPCNKTATDKPKPCCGGCVPPPPRCKCGVDGCGGGCSGGHGGECGGGG
GGCKKPCCSPPPCPWQPVCPPPPCGGGGYVVYEQPEGCSVM

Transcript Sequence

Transcript ID

Os04t0400600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19819412:19820288:-1 gene:Os04g0400600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0113L04.4 protein. (Os04t0400600-00)
Sequence

AACTAAGATCAAGAGTTTCTGAATTCTTTTTCTGAATGTACCTGTGTTGATTTGTCTGTC
TGTCTGATCGATGCAGGCAAGCATTGCATCGAGAAGATCGAGTACGAGGGCGAGAAGGTG
ATCGTCCGGGGAAGCTTCTGCGCGGAGGAGCTCCGCACGTGCATCTGGCGCAAGGCCGGC
TGCAAGATCATCGTCAGCATCGTCATCGTCGAGGTGTGGCCGCCGCCGCCGCCGGCGGTC
ACCGTCAATGTCAAGGCCGACGTCACCGCCACGGCCGTCGCCGCGGCGGAGGCGGCGGCG
AAGGCCACCGCGGAGGCCTTCATCATGGTGGAGAGGGAGCACTGCAACAAGCAGCCGCCG
GCGTGCAAGATGGTGCCGTTCCCGTACCCGGTGCCCTACCCGGTGCCGTGCAACAAGACG
GCGACGGACAAGCCTAAGCCGTGCTGCGGCGGCTGCGTGCCTCCGCCGCCGCGGTGCAAG
TGCGGCGTCGACGGCTGCGGCGGCGGCTGTTCAGGAGGACACGGCGGGGAATGCGGGGGC
GGCGGCGGCGGCTGCAAGAAGCCCTGCTGTTCGCCGCCGCCGTGCCCGTGGCAGCCCGTC
TGCCCGCCGCCGCCGTGCGGCGGCGGCGGCTACGTCGTCTATGAGCAGCCGGAGGGATGC
TCTGTCATGTGATCGAACAGCTGCCGTACGTGCCTCGGAAATCGGAATAATTAAACGCGT
TAATTACTTATGTCTGGTGTGGTATTTTTTTCTTAATTAAATCATGTAATTTTATTAATT
GTCTATATTACTACACATGTAATTTGTTGTGTGTATACAGTATATACATGTATGTAATTT
GTTGTCTATATATTTGACATGTATATATATTTTGCTC