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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0398700-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:19693167:19694275:-1 gene:Os04g0398700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pollen Specific 1 description:Similar to Pollen specific protein C13 precursor. (Os04t0398700-00)
Sequence

ATGGCCTCTCTCCGCACCATTCCGGTGATCTTCGGCATCCTCTTCTATGTCCTTGCCAGC
ACTGCCACTGCCACCGACGCACCGGACTACGTCGTCCAAGGCCGTGTCTACTGTGACACG
TGCCGCGCCGGGTTCGAGACCAATGTCACCGAGTATATCAAGGGTGCCAAGGTCAGGCTG
GAGTGCAAGCACTTTGGCACCGACAAGGTCGAGCGTGCGATTGACGGTGTGACTGATGAG
ACCGGGACATACAAGATTGAGCTCAAGGACAGCCATGAGGAGGACATCTGCGAGGTTGTC
CTCGTCCACAGCCCCCTTGCAAACTGCTCTGAAATCGAGGCCGAAAGGGATCGTGCCCGT
GTTTTGCTCACCAGGAATGTCGGCATCTGTGACAACCTGCGCTTAGCCAACCCACTCGGC
TACCTCAAGGACATCCCACTGCCCATCTGCGGCGCGCTGCTCAAGCAGTTCGACCTGGCT
GATGATGATAACGAGTAA

Peptide Sequence

PEP ID

Os04t0398700-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:19693167:19694275:-1 gene:Os04g0398700 transcript:Os04t0398700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pollen Specific 1 description:Similar to Pollen specific protein C13 precursor. (Os04t0398700-00)
Sequence

MASLRTIPVIFGILFYVLASTATATDAPDYVVQGRVYCDTCRAGFETNVTEYIKGAKVRL
ECKHFGTDKVERAIDGVTDETGTYKIELKDSHEEDICEVVLVHSPLANCSEIEAERDRAR
VLLTRNVGICDNLRLANPLGYLKDIPLPICGALLKQFDLADDDNE

Transcript Sequence

Transcript ID

Os04t0398700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19693167:19694275:-1 gene:Os04g0398700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Pollen Specific 1 description:Similar to Pollen specific protein C13 precursor. (Os04t0398700-00)
Sequence

CATCATCCATGGCCTCTCTCCGCACCATTCCGGTGATCTTCGGCATCCTCTTCTATGTCC
TTGCCAGCACTGCCACTGCCACCGACGCACCGGACTACGTCGTCCAAGGCCGTGTCTACT
GTGACACGTGCCGCGCCGGGTTCGAGACCAATGTCACCGAGTATATCAAGGGTGCCAAGG
TCAGGCTGGAGTGCAAGCACTTTGGCACCGACAAGGTCGAGCGTGCGATTGACGGTGTGA
CTGATGAGACCGGGACATACAAGATTGAGCTCAAGGACAGCCATGAGGAGGACATCTGCG
AGGTTGTCCTCGTCCACAGCCCCCTTGCAAACTGCTCTGAAATCGAGGCCGAAAGGGATC
GTGCCCGTGTTTTGCTCACCAGGAATGTCGGCATCTGTGACAACCTGCGCTTAGCCAACC
CACTCGGCTACCTCAAGGACATCCCACTGCCCATCTGCGGCGCGCTGCTCAAGCAGTTCG
ACCTGGCTGATGATGATAACGAGTAATGCGATGATCGTCATGGAACCACCGGAGAGGCTG
CATTAATTATAAATCAGTTACATGGCTTGCAAAATAGCATGGATGTATCCGTAAAAGGCA
GAATCTAAGCATATCTGTCCAAAAACATGAAAAATCATTCTTGCCACCAGTTCTTCGCCA
ATATATGTATGAGGGTATGCTGCAAAAACTTGGCAACCAAAATAACCACTGATCTAACTT
GCCATTCTGATTCCAACGATACAATTTTCATTTCTTTCAAAATTTACTAACTTACAAAGA
TTCATTAAGTTAGATAAGGCCAAGGTGTACATTACACCCGGCACTGCACGTTGATTACAT
CACATTTCAGGAAGTATGAACT