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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0398600-03
CDS Infomation

cds chromosome:IRGSP-1.0:4:19691881:19693300:1 gene:Os04g0398600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os04t0398600-01);Similar to Pectin-glucuronyltransferase. (Os04t0398600-02);Similar to H0209H04.3 protein. (Os04t0398600-03)
Sequence

GATTGGTTTTACACGCCAGTTTATACTACTTGTGACCTAACTCCGGCTGGACTGCCCTTG
CCATTTAAGTCGCCGAGGGTGATGAGGAGTGCGATCCAGTACATTTCGCACAAGTGGCCC
TTCTGGAATAGAACAGATGGAGCAGACCACTTCTTTGTTGTCCCGCATGATTTTGGTGCA
TGTTTTCACTATCAGGAAGAAAAAGCTATTGAGCGTGGAATTCTACCGTTGCTGCAACGT
GCTACGTTGGTCCAAACATTTGGACAGGAGAACCATGTTTGCTTAAAAGAGGGTTCTATC
ACTATACCACCCTACGCTCCTCCACAGAAAATGCAGGCTCACTTGATCCCCCCTGACACT
CCACGTTCAATCTTCGTCTACTTCCGGGGACTATTCTATGACACTGGAAATGACCCCGAG
GGTGGTTACTATGCAAGAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCA
TTATTCGACATTTCCACGGATCACCCTCCCACCTACTATGAAGACATGCAGCGTGCTGTC
TTCTGTCTGTGCCCATTGGGCTGGGCACCATGGAGCCCTAGGTTGGTTGAGGCTGTGGTC
TTTGGCTGCATTCCAGTCATCATTGCTGACGACATTGTGCTACCATTTGCCGATGCAATC
CCTTGGGAGGAAATTGGCGTGTTTGTTGAGGAGAAGGATGTTCCAAAGTTAGACACCATC
CTCACATCGATGCCAATCGACGATATTTTAAGAAAGCAAAGATTGCTTGCAAATCCATCA
ATGAAGCAGGCCATGTTGTTTCCACAGCCAGCCCAACCAAGAGATGCGTTCCACCAGATC
TTGAATGGCCTTGCTCGCAAGCTTCCACACCCAGAGGGAGTATACTTGCAACCCAGTGAC
AAGCGCCTCAACTGGACTGCTGGACCTGTTGGAGATCTGAAAGCTTGGTAG

Peptide Sequence

PEP ID

Os04t0398600-03
PEP Infomation

pep chromosome:IRGSP-1.0:4:19691881:19693300:1 gene:Os04g0398600 transcript:Os04t0398600-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os04t0398600-01);Similar to Pectin-glucuronyltransferase. (Os04t0398600-02);Similar to H0209H04.3 protein. (Os04t0398600-03)
Sequence

DWFYTPVYTTCDLTPAGLPLPFKSPRVMRSAIQYISHKWPFWNRTDGADHFFVVPHDFGA
CFHYQEEKAIERGILPLLQRATLVQTFGQENHVCLKEGSITIPPYAPPQKMQAHLIPPDT
PRSIFVYFRGLFYDTGNDPEGGYYARGARASLWENFKNNPLFDISTDHPPTYYEDMQRAV
FCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVEEKDVPKLDTI
LTSMPIDDILRKQRLLANPSMKQAMLFPQPAQPRDAFHQILNGLARKLPHPEGVYLQPSD
KRLNWTAGPVGDLKAW

Transcript Sequence

Transcript ID

Os04t0398600-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19691881:19693300:1 gene:Os04g0398600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectin-glucuronyltransferase. (Os04t0398600-01);Similar to Pectin-glucuronyltransferase. (Os04t0398600-02);Similar to H0209H04.3 protein. (Os04t0398600-03)
Sequence

CTGATTGGTTTTACACGCCAGTTTATACTACTTGTGACCTAACTCCGGCTGGACTGCCCT
TGCCATTTAAGTCGCCGAGGGTGATGAGGAGTGCGATCCAGTACATTTCGCACAAGTGGC
CCTTCTGGAATAGAACAGATGGAGCAGACCACTTCTTTGTTGTCCCGCATGATTTTGGTG
CATGTTTTCACTATCAGGAAGAAAAAGCTATTGAGCGTGGAATTCTACCGTTGCTGCAAC
GTGCTACGTTGGTCCAAACATTTGGACAGGAGAACCATGTTTGCTTAAAAGAGGGTTCTA
TCACTATACCACCCTACGCTCCTCCACAGAAAATGCAGGCTCACTTGATCCCCCCTGACA
CTCCACGTTCAATCTTCGTCTACTTCCGGGGACTATTCTATGACACTGGAAATGACCCCG
AGGGTGGTTACTATGCAAGAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATC
CATTATTCGACATTTCCACGGATCACCCTCCCACCTACTATGAAGACATGCAGCGTGCTG
TCTTCTGTCTGTGCCCATTGGGCTGGGCACCATGGAGCCCTAGGTTGGTTGAGGCTGTGG
TCTTTGGCTGCATTCCAGTCATCATTGCTGACGACATTGTGCTACCATTTGCCGATGCAA
TCCCTTGGGAGGAAATTGGCGTGTTTGTTGAGGAGAAGGATGTTCCAAAGTTAGACACCA
TCCTCACATCGATGCCAATCGACGATATTTTAAGAAAGCAAAGATTGCTTGCAAATCCAT
CAATGAAGCAGGCCATGTTGTTTCCACAGCCAGCCCAACCAAGAGATGCGTTCCACCAGA
TCTTGAATGGCCTTGCTCGCAAGCTTCCACACCCAGAGGGAGTATACTTGCAACCCAGTG
ACAAGCGCCTCAACTGGACTGCTGGACCTGTTGGAGATCTGAAAGCTTGGTAGTGAGCAG
CTTCCCTCTCCTTGGACGATCCTTGTATGAAAACCTCGTAGGGTCAGTCATCAGTTCATA
CTTCCTGAAATGTGATGTAATCAACGTGCAGTGCCGGGTGTAATGTACACCTTGGCCTTA
TCTAACTTAATGAATCTTTGTAAGTTAGTAAATTTTGAAAGAAATGAAAATTGTATCGTT
GGAATC