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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0396500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:19563980:19575929:1 gene:Os04g0396500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LAX PANICLE 2 description:Regulation of axillary meristem formation (Os04t0396500-01)
Sequence

ATGGTCCCGGCTCGGAGCCTGGCGCACCCGCACCCGCACCTCGTCCGCCGCCGCCGCGAC
CACGCCGCCGCCGCGCATGGCGCCACCGCCCGTTGCGACGACGACGACGACGGCGTCGTG
ACGCCGCGGGGGCCGACGAGATACATGGCGCAGGAGCCCATCAACCACCACCAGCACCAG
CACGACCCGCCCAAGCAGCCCCCGCCGCGGGAGGCCGACGACGACCACCACCGGATTCAG
GAGAGGGAGCCGCTGCCGCCGCCGACGACGACGACGCGGAACCAGCGGCTCCAGCTGCAG
CTGGGCGGAGACGGACACCACAACCACCACCACCACCACCACCAGGAGGTCGCCGGGACG
AGCGGCAGCAGCAGCGGCGGGAGCAGCAGCAACAACGGAGGCGGCGGCACCAGGGACTGG
CTCCGCCTCGCCACCGGCCCGGCATCGCCGGGGGCCTCCGCCGGCTCCGACCACGACCTC
TTCCCGTCCACCACCACGACGGCGCCCGCGCCGCAGCCGCCGACGCCGACGCCGACGCCG
ACGCCGACGCCGACGCCGCGCCACCACCACCACGACGTGCTGGTGCTCCCGGGCATGCCG
CCGCCGGGATCCTTCCTCCGCCCCGGCCCCGCCATGCCCGGCATTCCGCAGGCGTCGATA
CCCACGCACATGCTGCGCGCCGCCCCGCCCTGGCTGCCACCGTGGAGCCCCGTGGCCGCG
CCGCCGCCGCTCCTCCCGTTCCCCCACCAACACCGCGCGTTCTACGCCGCGCCGCCGACG
ACGACGCCGCCCGCCTCCTCGGGCTTCGACGCGATCAGGGTCGTCCTCCCGCCGTCCGCC
GTCGCCGCCGCCGCCGGCGTCTGGTTCGTGCTCCAGGCCGCGCCGCTCCAAGGGAGGGAG
CCATTCTTGCCTCAGATTCCAAGGAGCTACCTACGGATCAAGGATGGGAGGGTGACAGTA
AGGTTGCTGACCAAGTACCTGGTTAACAAGCTTGGATTGGAAGATGAATCAGAGGTGGAG
ATAACATGCAGAGGGAGACAGCTCCTCCCGATCCTGACATTGCAGCATGTCCGTGACAGC
ATCTGGTGCCGGAGAGACGCCGTGTCGCCGTCGGCCGCGCCGGACATACCAACCGCTGAC
CACCACCAGCACATCATGGTTTTGCAGTATGGCAGAAGGCCCTAG

Peptide Sequence

PEP ID

Os04t0396500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:19563980:19575929:1 gene:Os04g0396500 transcript:Os04t0396500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LAX PANICLE 2 description:Regulation of axillary meristem formation (Os04t0396500-01)
Sequence

MVPARSLAHPHPHLVRRRRDHAAAAHGATARCDDDDDGVVTPRGPTRYMAQEPINHHQHQ
HDPPKQPPPREADDDHHRIQEREPLPPPTTTTRNQRLQLQLGGDGHHNHHHHHHQEVAGT
SGSSSGGSSSNNGGGGTRDWLRLATGPASPGASAGSDHDLFPSTTTTAPAPQPPTPTPTP
TPTPTPRHHHHDVLVLPGMPPPGSFLRPGPAMPGIPQASIPTHMLRAAPPWLPPWSPVAA
PPPLLPFPHQHRAFYAAPPTTTPPASSGFDAIRVVLPPSAVAAAAGVWFVLQAAPLQGRE
PFLPQIPRSYLRIKDGRVTVRLLTKYLVNKLGLEDESEVEITCRGRQLLPILTLQHVRDS
IWCRRDAVSPSAAPDIPTADHHQHIMVLQYGRRP

Transcript Sequence

Transcript ID

Os04t0396500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19563980:19575929:1 gene:Os04g0396500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LAX PANICLE 2 description:Regulation of axillary meristem formation (Os04t0396500-01)
Sequence

GCGTCGACGAGGGTGAGAGGAGGAGGAGGAGGGGTGGGTGGGTGGCGCGAGCGCGAGCGC
TGGGGGTGGGGGTGGGCGGGGTGGATGGCATGAGCGGACGGCGCCCGCAGCCCGGATGGT
CCCGGCTCGGAGCCTGGCGCACCCGCACCCGCACCTCGTCCGCCGCCGCCGCGACCACGC
CGCCGCCGCGCATGGCGCCACCGCCCGTTGCGACGACGACGACGACGGCGTCGTGACGCC
GCGGGGGCCGACGAGATACATGGCGCAGGAGCCCATCAACCACCACCAGCACCAGCACGA
CCCGCCCAAGCAGCCCCCGCCGCGGGAGGCCGACGACGACCACCACCGGATTCAGGAGAG
GGAGCCGCTGCCGCCGCCGACGACGACGACGCGGAACCAGCGGCTCCAGCTGCAGCTGGG
CGGAGACGGACACCACAACCACCACCACCACCACCACCAGGAGGTCGCCGGGACGAGCGG
CAGCAGCAGCGGCGGGAGCAGCAGCAACAACGGAGGCGGCGGCACCAGGGACTGGCTCCG
CCTCGCCACCGGCCCGGCATCGCCGGGGGCCTCCGCCGGCTCCGACCACGACCTCTTCCC
GTCCACCACCACGACGGCGCCCGCGCCGCAGCCGCCGACGCCGACGCCGACGCCGACGCC
GACGCCGACGCCGCGCCACCACCACCACGACGTGCTGGTGCTCCCGGGCATGCCGCCGCC
GGGATCCTTCCTCCGCCCCGGCCCCGCCATGCCCGGCATTCCGCAGGCGTCGATACCCAC
GCACATGCTGCGCGCCGCCCCGCCCTGGCTGCCACCGTGGAGCCCCGTGGCCGCGCCGCC
GCCGCTCCTCCCGTTCCCCCACCAACACCGCGCGTTCTACGCCGCGCCGCCGACGACGAC
GCCGCCCGCCTCCTCGGGCTTCGACGCGATCAGGGTCGTCCTCCCGCCGTCCGCCGTCGC
CGCCGCCGCCGGCGTCTGGTTCGTGCTCCAGGCCGCGCCGCTCCAAGGGAGGGAGCCATT
CTTGCCTCAGATTCCAAGGAGCTACCTACGGATCAAGGATGGGAGGGTGACAGTAAGGTT
GCTGACCAAGTACCTGGTTAACAAGCTTGGATTGGAAGATGAATCAGAGGTGGAGATAAC
ATGCAGAGGGAGACAGCTCCTCCCGATCCTGACATTGCAGCATGTCCGTGACAGCATCTG
GTGCCGGAGAGACGCCGTGTCGCCGTCGGCCGCGCCGGACATACCAACCGCTGACCACCA
CCAGCACATCATGGTTTTGCAGTATGGCAGAAGGCCCTAGTAGACAGCTCCTTCTTCCTA
GCTCCCTCTCTGATCAATGACCCAACACTCTCACAACAACAAAAAAAAATGTAGATTCTA
CTCCCCCCCCTCTCTTCTAACAACTTTTGCCGGTA