Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0394700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:19411490:19418703:1 gene:Os04g0394700 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os04t0394700-01)
Sequence	ATGAAATCGCCATTGCGGAAGTTCAGGGGATTCGGTCTCCACAGCCACAGGGAGAGGAAG GACCACCGCCCGCCGCCGGCCAAGCTCGACGAGCTCGCCGACGCCGCCCAGGAAATGGAG GAAATGAGGAATTGTTATGACAGCTTGCTTTCAGCTGCAGCTGCAACAATGAACAGTGTA TATGAGTTTGCAGAAGCTATGGAGGAAATGGGAACTTGCTTACTTGAGAAAACTGCATTG AATTATGATGATGATGACAGTGGCAGAGTTCTGATGATGCTAGGAAAGGCCCAATTCGAA CTGCAGAAGTTTGTTGATAACTATCGTACAAATATCATAAATACCATCACAAACCCATCA GAGTCACTTCTCAAAGAGCTACAAGTTGTAGAGGAAATGAAGGAACTCTGTGATCATAAA AGACAGGAATATGAAGCCATGCGAGCAGCCTATAGAGAGAAAGGACGGTCAAGGCATTCC AAAACCGAAACATTATCCTCGGAACAGCTGCAAGCTTATTTTCTTGACTATCAAGAGGAT GCAGCATTGTTTATATTCCGATTGAAATCATTGAAGCAAGGTCAATTCCGTAGTATTTTA ACACAGGCTGCTCGCCACCATTCTGCTCAGTTGAGTTTTTTCAGGCGAGGGTTGAAGTAT CTAGAGGCTCTGGAACCTCATGTAAAAGCAGTTGCTGAGAAACAGCACATTGAATACCCT TTAAATGGACTAGATGACGACACAGATAATGATGAGTACAGCTCTTACCAGGGCAATCAA AGTGATGACAGTGAGTTAAGTTTTGACTATGAGATAAATGACAGGGATAAGGACTTCCCC GCTTCCAGAAGTTCAATGGATTTGGATCAGTCTAATCAGGCATGTTCCCCAGAACCTCTG AAGGAACACAAGCAGGAATATACCGAACAAATACAGGCAGATTTTGCAGCTCCTCGAGTG AAGCTTGAGATTGGTACCCAATCAGCGCCAATTTCTGCTGACAATGTGTTTGATCCATCT ACAAGGTTTCGGAAAATGAATACGTCAAACAGAACAAATTATTCGTACAAACTCCCGACA CCAGATGATGACAAGAACTCCACTTCAGCACACACCAATAGATCTCCTCATTCAGATCAA CCAGAAAGTAAATCTCACGTAGCAGAAAATTTATGGCATTCCTCTCCACTGGTCAAAGGT TTTAAACCAAACTCCATGTTTAGTGGACCTGTTAAGATGCCATCAAGTACTGAAGGGATA TCAGCGCCACTTGTTTATCCCTACGCTACTTCAGATTTTAAGAAAATGAAGAGGGAAGCA TTTTCCGGTCCAATTCCAAGCAAAGCAGGATTGAACAAGCCCTTGTTTTCTGCTACTGAT CTCAGAGCACCAATGAACTATCCTCGTGCAATGTCAACAAAATCATATGGCCCAGGCTGG CAGTCATCCGTGGCTCCAAAATTTACCCCTAGGATCACTTCACTCCCAACTACATCACCG AGAATAAGTGAGCTACATGAACTGCCTAGGCCTCCAGCAAATGTAGGTGCTGCCCGTCCT GGTTTGGTTGGATATTCTGGCCCTCTGGTATCAAGGCGGCAGGTGCCTAATGTACCGACC CGCGCCTCACCACCATCACAAACAGCATCACCTCTTCCACGGCCACCTGCTGCCATGACC CGCAGTTATTCTATACCTTCAAATAGCCAAAGAACACCCATTCTTACCGTGAATAAGTTG TTGGAAGCTAGGCATAGCAGAGAGAGTAGTGAAGTTTCCTCTCCCCCATTAACACCTATA TCTTTGGCTGATGTTTCCCGCAGATCAACAGCAGAAACAGCTCTTGAAAAAACAAGGATG ATGGAAACCTTGTGA

Peptide Sequence

PEP ID	Os04t0394700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:19411490:19418703:1 gene:Os04g0394700 transcript:Os04t0394700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os04t0394700-01)
Sequence	MKSPLRKFRGFGLHSHRERKDHRPPPAKLDELADAAQEMEEMRNCYDSLLSAAAATMNSV YEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLGKAQFELQKFVDNYRTNIINTITNPS ESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLSSEQLQAYFLDYQED AALFIFRLKSLKQGQFRSILTQAARHHSAQLSFFRRGLKYLEALEPHVKAVAEKQHIEYP LNGLDDDTDNDEYSSYQGNQSDDSELSFDYEINDRDKDFPASRSSMDLDQSNQACSPEPL KEHKQEYTEQIQADFAAPRVKLEIGTQSAPISADNVFDPSTRFRKMNTSNRTNYSYKLPT PDDDKNSTSAHTNRSPHSDQPESKSHVAENLWHSSPLVKGFKPNSMFSGPVKMPSSTEGI SAPLVYPYATSDFKKMKREAFSGPIPSKAGLNKPLFSATDLRAPMNYPRAMSTKSYGPGW QSSVAPKFTPRITSLPTTSPRISELHELPRPPANVGAARPGLVGYSGPLVSRRQVPNVPT RASPPSQTASPLPRPPAAMTRSYSIPSNSQRTPILTVNKLLEARHSRESSEVSSPPLTPI SLADVSRRSTAETALEKTRMMETL

Transcript Sequence

Transcript ID	Os04t0394700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:19411490:19418703:1 gene:Os04g0394700 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os04t0394700-01)
Sequence	GAATTCTCTCTCTCCTCCATTTTTGTGAGTTTTTTTTTGTTGTTTTTTTTTTTTTGGTCT CGCGAAATCCAAAGACCCAAGAACAACCAAAAAGGCCAATCCTTTTCTCCTCCTCCTCCT CCATCTCCATCTCCTCTTCGAGTCCTCGTCGTCGTGGTGGTCGTCGGAGGTGGTATTCTT GATTTGATTCGAGGAGGCGGGGGGGGGGGGGGAGATGAAATCGCCATTGCGGAAGTTCAG GGGATTCGGTCTCCACAGCCACAGGGAGAGGAAGGACCACCGCCCGCCGCCGGCCAAGCT CGACGAGCTCGCCGACGCCGCCCAGGAAATGGAGGAAATGAGGAATTGTTATGACAGCTT GCTTTCAGCTGCAGCTGCAACAATGAACAGTGTATATGAGTTTGCAGAAGCTATGGAGGA AATGGGAACTTGCTTACTTGAGAAAACTGCATTGAATTATGATGATGATGACAGTGGCAG AGTTCTGATGATGCTAGGAAAGGCCCAATTCGAACTGCAGAAGTTTGTTGATAACTATCG TACAAATATCATAAATACCATCACAAACCCATCAGAGTCACTTCTCAAAGAGCTACAAGT TGTAGAGGAAATGAAGGAACTCTGTGATCATAAAAGACAGGAATATGAAGCCATGCGAGC AGCCTATAGAGAGAAAGGACGGTCAAGGCATTCCAAAACCGAAACATTATCCTCGGAACA GCTGCAAGCTTATTTTCTTGACTATCAAGAGGATGCAGCATTGTTTATATTCCGATTGAA ATCATTGAAGCAAGGTCAATTCCGTAGTATTTTAACACAGGCTGCTCGCCACCATTCTGC TCAGTTGAGTTTTTTCAGGCGAGGGTTGAAGTATCTAGAGGCTCTGGAACCTCATGTAAA AGCAGTTGCTGAGAAACAGCACATTGAATACCCTTTAAATGGACTAGATGACGACACAGA TAATGATGAGTACAGCTCTTACCAGGGCAATCAAAGTGATGACAGTGAGTTAAGTTTTGA CTATGAGATAAATGACAGGGATAAGGACTTCCCCGCTTCCAGAAGTTCAATGGATTTGGA TCAGTCTAATCAGGCATGTTCCCCAGAACCTCTGAAGGAACACAAGCAGGAATATACCGA ACAAATACAGGCAGATTTTGCAGCTCCTCGAGTGAAGCTTGAGATTGGTACCCAATCAGC GCCAATTTCTGCTGACAATGTGTTTGATCCATCTACAAGGTTTCGGAAAATGAATACGTC AAACAGAACAAATTATTCGTACAAACTCCCGACACCAGATGATGACAAGAACTCCACTTC AGCACACACCAATAGATCTCCTCATTCAGATCAACCAGAAAGTAAATCTCACGTAGCAGA AAATTTATGGCATTCCTCTCCACTGGTCAAAGGTTTTAAACCAAACTCCATGTTTAGTGG ACCTGTTAAGATGCCATCAAGTACTGAAGGGATATCAGCGCCACTTGTTTATCCCTACGC TACTTCAGATTTTAAGAAAATGAAGAGGGAAGCATTTTCCGGTCCAATTCCAAGCAAAGC AGGATTGAACAAGCCCTTGTTTTCTGCTACTGATCTCAGAGCACCAATGAACTATCCTCG TGCAATGTCAACAAAATCATATGGCCCAGGCTGGCAGTCATCCGTGGCTCCAAAATTTAC CCCTAGGATCACTTCACTCCCAACTACATCACCGAGAATAAGTGAGCTACATGAACTGCC TAGGCCTCCAGCAAATGTAGGTGCTGCCCGTCCTGGTTTGGTTGGATATTCTGGCCCTCT GGTATCAAGGCGGCAGGTGCCTAATGTACCGACCCGCGCCTCACCACCATCACAAACAGC ATCACCTCTTCCACGGCCACCTGCTGCCATGACCCGCAGTTATTCTATACCTTCAAATAG CCAAAGAACACCCATTCTTACCGTGAATAAGTTGTTGGAAGCTAGGCATAGCAGAGAGAG TAGTGAAGTTTCCTCTCCCCCATTAACACCTATATCTTTGGCTGATGTTTCCCGCAGATC AACAGCAGAAACAGCTCTTGAAAAAACAAGGATGATGGAAACCTTGTGAAAACTTGCATG GCCAAACTTCAGTCATCATAGGCAATTTTGTATGTAATTATTTGTGCATTCTAGATTGCC CTCTGTAAATTTATGTTTCTTGCGAAGGAAAAAGTTGAAATAAAGGCGCACTGGTTGGAA GATTTTTGTTTCTTTGGCCGGCTTTTCTGACAACCTTATGGATTTAGTGAATCTGACTAC TATTAGTTTACCATCACTCACTCAATATTCTGATTTTTTTGGGGGGATTGCTGATGTGAA CTATATTGGCGCTGTAAATACATTATTACCTTTACCATTTTCTTTGTTTGAAACAAAAAC ATGTGTTTCTCCTATGTATTTCCAGGACCAAAAGAACGATGTCGAAATTGTATATATTGA GTTTGAGCTGTGCT