Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0394300-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:19383372:19391614:-1 gene:Os04g0394300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27 description:Similar to H0718E12.5 protein. (Os04t0394300-01)
Sequence	ATGATCAAAGAATCTTCATCTCCTGCATTGGATGCTGATAAAATAGAAGTTCCTTCACCA AAGGACGAAAACAATTCCTCAAATTCTGAAGCTGCTACAGATAATGAAGACTTTGAAATT AGTGATGATGATGACGATGATCGTAACCACAAGCACCGGAAGCGGGAGGCGAGACCTCAA TCTTTTGATGAGAATACTGAGCAATCTCCAGGGGGTCCTCTGAAAAAAAGACACAAAATT TCTGGTGGAGCTGATTCACATGGGGAAGCACAGAAAGATTTCTTTCCGAAATTTAAGAGG CGCCCTGGAGCAGGGGCTCATAGTCGGGCACCTCGAGTTAATCCATCCTTTCGTGATTCA TCAGCTTCTGTGGCTGCTCGCGCTCCTATGACACGTGGAAGAGGAAGGAATGGTGCACCC TGGGCTCAGCATGAACCAAGATTTAACACACTTGAGATGATTGACTTTGCATCACAGATG GCCTCTCAAGGACCACCAACTCATCCTAGCTTATTTATGGGTCCTGCATTGCCAAGTGGT GGTAGTGCACAAAATGGTTCTTGGGGTCCATATGGATTTATGCCTGGAATGCCTAATGGA ATGCTGGATCCAATTCATCCACTTGGAATGCAAGGCCCTATTCAGCCTGCAATATCTCCT TTAATTGATCTTGGCATGCCTCGTCAACGTTGTAGAGACTTTGAGGAGCGTGGATTTTGC TTGAGAGGGGATATGTGCCCCATGGAGCACGGTCTGAATAGAATTGTTGTTGAAGACATG CAGAGCCTGTCACAGTTCAATCTTCCCGTCACAGTTCCAAATACTCAAGGACTAGGAATC CAAAATGAACCAGGAACTGCTCCTGTCAACACATCAAGCCTTGGAGGCAGTAAAGGTGTT CCTGCAAAAGACATCAAATCTGCTGTGACAAATGATGTACTGAAGCTAAATGGAACCACT GCTTTAGCTGTTTCTGATGCTGATGTATATGATCCTGATCAGCCTCTCTGGAACAACGAA CACCCTGATGCATCTGCTGGTTTTGCACATACTGATGGAGTATGGAATGCTGAATCCTTG GGCTATGAAGCAGCTCGGGAGCAGGGAAATCAGGTTCTTGCAGCTGATAGTTCACAGAAC TCAAAATCTTCTGTTTGGGGGCGAATAGCATCAAAAAAACTAGGGCATGGCAAGACAGCT AATGCTACTTCAACTAGCGCCACTGGAAACAAAAGAAATGAAAGTTATGATGAAATGGCT CCTAGCACTGTCCATGTCAATCCTGCTTCTGCTAAAGACAGTAATGGTCAATCCAATTCG AGAATATTTGGAGATGTGGGCCGGCAAAGTAACCGGGCTTCTCATAAAGCATCCCGGACA CTTTATGTAAATGGTATTCCTCTAGAAAGCAATAGATGGGAGGCCCTTCTTTCGCACTTC CAGAAATTTGGGCAGGTGATAGATATCTATATTCCATCTAACAGTGAAAAAGCTTTCGTT CAATTCTCTAAAAGAGAAGAGGCTGAAGCTGCCCTTAAAGCTCCAGACGCTGTAATGGGC AACCGCTTTATAAAGCTATGGTGGGCCAATAGAGATAGGATTCCTGATGAGGTAGAGGGT AGAATCCCAGCAAAATCTTCCCATATGTCTGCTGCCCTGGCCAATTCTGTCCCACAGCCA TCTTCTTCCAACCGAGGCAAGGAAAATCTTCAATCTGCAACTCCAAGAGCCAGTTCTGGA TCTTCTGCTGAAGCATCAGGTCCTGGTACAGGCCATAAAATGCTTCCTGCAAATAGTGTA AAATCATTACCTCCTGACACCAAAAGGCAAGAAAGTCTTGAGCTCTTGGAAGAACTTCGT AAAAAGCAGGAGATCTTAGCTCAGAAGCGTGATGAATTCCGCCGGCAGTTAGAGAAACTG GCAAAGCAAAAGGGTTTAGCAAATTCAGCCAAACAGGCAGAAGCTGGTGGAAAAGAAGTT GCTTCTAATGATGTACATAGAGTTACTGATTCGAAGTCCATGAACACCGGGACAGAAGGG CCTCGAGATGCTGCTGGTACACTGCAAAACAGAACTTCTGGAGAGCTGGCTTCATCTTCC CACAAATCATCGGCAACATCTGCACAGAAACCAGCTGTAGCTACTAAGCAGACAAGTCCT CTGTTAGTACCATCACAGAATAGGTTTAAGCTTGACAATCGGACCACGTCATTTCGAATC CTTCCACCTTTGCCACCTGAAATCGCAGATGAATCTGTCTTGAAAGATCACTTCATGTCA TTTGGGGAGCTTTCATCTGTTGTTCTGGAAGACACTGAAGCGTACAACCATGATGCTACC TTAAAACCTTCTCTGAGTTGCTCAGCTTGTGTGACATACACGACACGACAATCTGCTGAG AAAGCATTTATTGGTGGCAAATCTTGTAAAGGGCATACACTAAGATTTATGTGGTTAACA GCCTCTCCTGGTTCGACTAACCATTCTAGATTCCAGAAAACCTCAATTCCTGCCAGGGCC TCTAGTTTCTCCAGTCAAACTCAAAACATGCCATCTGAGTCTTCAACTACTGTAGGAAAA ATGTCATCCACAGTCAAATCCAGTACAACTGCAAAGCCTCACAGTGAATCCATGCCGACT GCCACAAGTGCGAAGACATCTGTTGAAATTCCCAAAGCTTTGTCTTCTAGAGATTCTGAT GTTTCACAATGA

Peptide Sequence

PEP ID	Os04t0394300-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:19383372:19391614:-1 gene:Os04g0394300 transcript:Os04t0394300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27 description:Similar to H0718E12.5 protein. (Os04t0394300-01)
Sequence	MIKESSSPALDADKIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQ SFDENTEQSPGGPLKKRHKISGGADSHGEAQKDFFPKFKRRPGAGAHSRAPRVNPSFRDS SASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMGPALPSG GSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDFEERGFC LRGDMCPMEHGLNRIVVEDMQSLSQFNLPVTVPNTQGLGIQNEPGTAPVNTSSLGGSKGV PAKDIKSAVTNDVLKLNGTTALAVSDADVYDPDQPLWNNEHPDASAGFAHTDGVWNAESL GYEAAREQGNQVLAADSSQNSKSSVWGRIASKKLGHGKTANATSTSATGNKRNESYDEMA PSTVHVNPASAKDSNGQSNSRIFGDVGRQSNRASHKASRTLYVNGIPLESNRWEALLSHF QKFGQVIDIYIPSNSEKAFVQFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPDEVEG RIPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSV KSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEV ASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSP LLVPSQNRFKLDNRTTSFRILPPLPPEIADESVLKDHFMSFGELSSVVLEDTEAYNHDAT LKPSLSCSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTASPGSTNHSRFQKTSIPARA SSFSSQTQNMPSESSTTVGKMSSTVKSSTTAKPHSESMPTATSAKTSVEIPKALSSRDSD VSQ

Transcript Sequence

Transcript ID	Os04t0394300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:19383372:19391614:-1 gene:Os04g0394300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27 description:Similar to H0718E12.5 protein. (Os04t0394300-01)
Sequence	GTGCAAATCATCGGAAATCATCGTGCGGGGGTGCTGCGGGCGGTTGCGTCGAGCCGCGAT ATTTCCCCCCCTCCGCTCGCCCTCGACTCCGACTCCGACTCCTCGCGAGTTCGCCCGCCG CCGCCGCCGCCGCCGCCGCCGATCCCCCATCCATCCCGCGACCGAGCAGGGTTGCCTCCG CCGCGTCCCGGGGGGGTTGACCTACATTGTTTGGCCAAGACAGCGAGTAAAATCTAGATG TAAAGTTTGCTGTGGGCTTGGGAAACTTGAAGATGATCAAAGAATCTTCATCTCCTGCAT TGGATGCTGATAAAATAGAAGTTCCTTCACCAAAGGACGAAAACAATTCCTCAAATTCTG AAGCTGCTACAGATAATGAAGACTTTGAAATTAGTGATGATGATGACGATGATCGTAACC ACAAGCACCGGAAGCGGGAGGCGAGACCTCAATCTTTTGATGAGAATACTGAGCAATCTC CAGGGGGTCCTCTGAAAAAAAGACACAAAATTTCTGGTGGAGCTGATTCACATGGGGAAG CACAGAAAGATTTCTTTCCGAAATTTAAGAGGCGCCCTGGAGCAGGGGCTCATAGTCGGG CACCTCGAGTTAATCCATCCTTTCGTGATTCATCAGCTTCTGTGGCTGCTCGCGCTCCTA TGACACGTGGAAGAGGAAGGAATGGTGCACCCTGGGCTCAGCATGAACCAAGATTTAACA CACTTGAGATGATTGACTTTGCATCACAGATGGCCTCTCAAGGACCACCAACTCATCCTA GCTTATTTATGGGTCCTGCATTGCCAAGTGGTGGTAGTGCACAAAATGGTTCTTGGGGTC CATATGGATTTATGCCTGGAATGCCTAATGGAATGCTGGATCCAATTCATCCACTTGGAA TGCAAGGCCCTATTCAGCCTGCAATATCTCCTTTAATTGATCTTGGCATGCCTCGTCAAC GTTGTAGAGACTTTGAGGAGCGTGGATTTTGCTTGAGAGGGGATATGTGCCCCATGGAGC ACGGTCTGAATAGAATTGTTGTTGAAGACATGCAGAGCCTGTCACAGTTCAATCTTCCCG TCACAGTTCCAAATACTCAAGGACTAGGAATCCAAAATGAACCAGGAACTGCTCCTGTCA ACACATCAAGCCTTGGAGGCAGTAAAGGTGTTCCTGCAAAAGACATCAAATCTGCTGTGA CAAATGATGTACTGAAGCTAAATGGAACCACTGCTTTAGCTGTTTCTGATGCTGATGTAT ATGATCCTGATCAGCCTCTCTGGAACAACGAACACCCTGATGCATCTGCTGGTTTTGCAC ATACTGATGGAGTATGGAATGCTGAATCCTTGGGCTATGAAGCAGCTCGGGAGCAGGGAA ATCAGGTTCTTGCAGCTGATAGTTCACAGAACTCAAAATCTTCTGTTTGGGGGCGAATAG CATCAAAAAAACTAGGGCATGGCAAGACAGCTAATGCTACTTCAACTAGCGCCACTGGAA ACAAAAGAAATGAAAGTTATGATGAAATGGCTCCTAGCACTGTCCATGTCAATCCTGCTT CTGCTAAAGACAGTAATGGTCAATCCAATTCGAGAATATTTGGAGATGTGGGCCGGCAAA GTAACCGGGCTTCTCATAAAGCATCCCGGACACTTTATGTAAATGGTATTCCTCTAGAAA GCAATAGATGGGAGGCCCTTCTTTCGCACTTCCAGAAATTTGGGCAGGTGATAGATATCT ATATTCCATCTAACAGTGAAAAAGCTTTCGTTCAATTCTCTAAAAGAGAAGAGGCTGAAG CTGCCCTTAAAGCTCCAGACGCTGTAATGGGCAACCGCTTTATAAAGCTATGGTGGGCCA ATAGAGATAGGATTCCTGATGAGGTAGAGGGTAGAATCCCAGCAAAATCTTCCCATATGT CTGCTGCCCTGGCCAATTCTGTCCCACAGCCATCTTCTTCCAACCGAGGCAAGGAAAATC TTCAATCTGCAACTCCAAGAGCCAGTTCTGGATCTTCTGCTGAAGCATCAGGTCCTGGTA CAGGCCATAAAATGCTTCCTGCAAATAGTGTAAAATCATTACCTCCTGACACCAAAAGGC AAGAAAGTCTTGAGCTCTTGGAAGAACTTCGTAAAAAGCAGGAGATCTTAGCTCAGAAGC GTGATGAATTCCGCCGGCAGTTAGAGAAACTGGCAAAGCAAAAGGGTTTAGCAAATTCAG CCAAACAGGCAGAAGCTGGTGGAAAAGAAGTTGCTTCTAATGATGTACATAGAGTTACTG ATTCGAAGTCCATGAACACCGGGACAGAAGGGCCTCGAGATGCTGCTGGTACACTGCAAA ACAGAACTTCTGGAGAGCTGGCTTCATCTTCCCACAAATCATCGGCAACATCTGCACAGA AACCAGCTGTAGCTACTAAGCAGACAAGTCCTCTGTTAGTACCATCACAGAATAGGTTTA AGCTTGACAATCGGACCACGTCATTTCGAATCCTTCCACCTTTGCCACCTGAAATCGCAG ATGAATCTGTCTTGAAAGATCACTTCATGTCATTTGGGGAGCTTTCATCTGTTGTTCTGG AAGACACTGAAGCGTACAACCATGATGCTACCTTAAAACCTTCTCTGAGTTGCTCAGCTT GTGTGACATACACGACACGACAATCTGCTGAGAAAGCATTTATTGGTGGCAAATCTTGTA AAGGGCATACACTAAGATTTATGTGGTTAACAGCCTCTCCTGGTTCGACTAACCATTCTA GATTCCAGAAAACCTCAATTCCTGCCAGGGCCTCTAGTTTCTCCAGTCAAACTCAAAACA TGCCATCTGAGTCTTCAACTACTGTAGGAAAAATGTCATCCACAGTCAAATCCAGTACAA CTGCAAAGCCTCACAGTGAATCCATGCCGACTGCCACAAGTGCGAAGACATCTGTTGAAA TTCCCAAAGCTTTGTCTTCTAGAGATTCTGATGTTTCACAATGAGGTTAAGGATTGAAGA TTGGGTGGCCATCTGAGCCCTGAGGCTTCAAAATTTGGTGGCTTGTCTATTACACAAACC TGCACCTCTTTCAGATCCCCGGCGTATTTAAGTTTTGGAAAATACTGTTGAAATTATTGA TAGTTTATTTTGTGGCGGCATTGGGGCAAAACCCATCCAAAGCCAAAAGGGTAAAGGGTA GTGTTAGGATCTAAACTACGCCTGCTGGCATTTTGGTAAATCATTGTCTGATCTTCCTTG AGAGAATGTAATTGGTGTTGTATACTTTCTTGAATGGAAGTAGCATCCTGCTGAAAGCGG TTCATACTATGTTGTTAGGTCTCTGTATTTTGTAGCTCTCCCTTGCTGAAAGCAGCTCCA TGTGGATTCCATTTTGCTCTCACTGAAGCAGCAACCTTTTTTATTTTTAAGTTTCTCATG TAGGTTTCTTGTCCAAAGTTTCAATTGATAGGAAAACATGACATGTTCACGTACATGACT GCACCCCTTTTCAATGCAACTTCTCTAACCAAATACTACCTCCATCTTAAAATGTCTGAC GCCGTTGATTTTTTTAAAATTGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTG TTAATTCTTTTTCTATCATTTGATTTATTGTTAAATATACTTTTATGTATACATATAATT TTACACATATCACAAAAGTTTTTGAATAAAATGAACGGTCAAACATGTTTAAAAAAGTCA ACGCTATCAAACATTTAGGGAAGGAGGGAGCACGTATCACT