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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0393100-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:19323481:19327151:1 gene:Os04g0393100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0145N07.8 protein. (Os04t0393100-00)
Sequence

ATGCAGCAGCAGCAGCAGGAGATGCCGCAGTCGAGGATCTTCGGACAGCCGCCTCCACCG
ACGCAGCAGCAGCAGCAGCAGCAGCGGGGATTCGGGTTCGGCGGCGCGGTGCCTTCGCCC
CGCGGGATGCCGATGGCTGCGGGGGCCGCGGGGCCGCATCTCGCCGTGCAGCAGAAGCAG
CATACGACCACCCTCGCGCCGCCGCCGCCGCCGCAGCAGCAGAATCAGGGATCTTCTTCG
TCGGCGCGAGGGATGGCGGCGGCGGCGGAGCAGATCGCGTACGAGGACGCGTGGAAGGCG
TGCAACCCGGACATCACGACGCCGTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTT
CCGTACCACGTGTTCGCGGAGTACGAGGAGGACGAGATCTACGCGGAGGACCAGCCGCCG
GCGAAGGACACGTCGAGCGTGCAGGAGTGGGACGACGACCGCGAAGCCGAGGCGATCCGC
ATTGCGGAGGAGTTCGAGAAGCAGGTGCTGACCTTCAACGTGGCCGTCCGGAAGTCCGCC
GCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAG
CAGCGGCAGTCGGAGCACGTCCGCGCCCTCGTCCGGCAGCAGCAGCTAGTGGCGCTGCAG
AAGCAGCAGCAGCAGCAGGAGAAGGAGGCGGCGGCGCTGCAGCGGCAACTCATGCTGGAG
CAGCAACAGCAGCAGCAGGCGGCGCTGCAGCAGATGATGGCGATGGAGCAGAGGCAGCAG
CAGCAACAGATGATGTCAGCGCTGCAGCATCAGCGACAGCCGGCGATCGTCATGCCGCAG
CAGGGGCATTCGTCCGCCGCCGCATTGGATGCGTTCCTGGATGCGTACGCTGAGGTGGGG
CCGCCGCGACAGCAGCATCGGCATGGCGTGCAGGCGCCGCAGCAGCCGGAGTCGTCGTCG
ACGTCGGGGCCGGCGTACTGGGCTCCGGCGCATGCCGTGCCGCCGCCGCCGGAGAATGGC
GCCGGAGCATTGAGGGAGTAA

Peptide Sequence

PEP ID

Os04t0393100-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:19323481:19327151:1 gene:Os04g0393100 transcript:Os04t0393100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0145N07.8 protein. (Os04t0393100-00)
Sequence

MQQQQQEMPQSRIFGQPPPPTQQQQQQQRGFGFGGAVPSPRGMPMAAGAAGPHLAVQQKQ
HTTTLAPPPPPQQQNQGSSSSARGMAAAAEQIAYEDAWKACNPDITTPFASVEDAISRLL
PYHVFAEYEEDEIYAEDQPPAKDTSSVQEWDDDREAEAIRIAEEFEKQVLTFNVAVRKSA
AGAARAEERLMVENLLLADEQRQSEHVRALVRQQQLVALQKQQQQQEKEAAALQRQLMLE
QQQQQQAALQQMMAMEQRQQQQQMMSALQHQRQPAIVMPQQGHSSAAALDAFLDAYAEVG
PPRQQHRHGVQAPQQPESSSTSGPAYWAPAHAVPPPPENGAGALRE

Transcript Sequence

Transcript ID

Os04t0393100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:19323481:19327151:1 gene:Os04g0393100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0145N07.8 protein. (Os04t0393100-00)
Sequence

ATGCAGCAGCAGCAGCAGGAGATGCCGCAGTCGAGGATCTTCGGACAGCCGCCTCCACCG
ACGCAGCAGCAGCAGCAGCAGCAGCGGGGATTCGGGTTCGGCGGCGCGGTGCCTTCGCCC
CGCGGGATGCCGATGGCTGCGGGGGCCGCGGGGCCGCATCTCGCCGTGCAGCAGAAGCAG
CATACGACCACCCTCGCGCCGCCGCCGCCGCCGCAGCAGCAGAATCAGGGATCTTCTTCG
TCGGCGCGAGGGATGGCGGCGGCGGCGGAGCAGATCGCGTACGAGGACGCGTGGAAGGCG
TGCAACCCGGACATCACGACGCCGTTCGCCTCCGTCGAGGACGCCATCAGCAGGCTGCTT
CCGTACCACGTGTTCGCGGAGTACGAGGAGGACGAGATCTACGCGGAGGACCAGCCGCCG
GCGAAGGACACGTCGAGCGTGCAGGAGTGGGACGACGACCGCGAAGCCGAGGCGATCCGC
ATTGCGGAGGAGTTCGAGAAGCAGGTGCTGACCTTCAACGTGGCCGTCCGGAAGTCCGCC
GCCGGCGCCGCCCGCGCCGAGGAGCGGCTCATGGTGGAGAACCTCCTGCTCGCCGACGAG
CAGCGGCAGTCGGAGCACGTCCGCGCCCTCGTCCGGCAGCAGCAGCTAGTGGCGCTGCAG
AAGCAGCAGCAGCAGCAGGAGAAGGAGGCGGCGGCGCTGCAGCGGCAACTCATGCTGGAG
CAGCAACAGCAGCAGCAGGCGGCGCTGCAGCAGATGATGGCGATGGAGCAGAGGCAGCAG
CAGCAACAGATGATGTCAGCGCTGCAGCATCAGCGACAGCCGGCGATCGTCATGCCGCAG
CAGGGGCATTCGTCCGCCGCCGCATTGGATGCGTTCCTGGATGCGTACGCTGAGGTGGGG
CCGCCGCGACAGCAGCATCGGCATGGCGTGCAGGCGCCGCAGCAGCCGGAGTCGTCGTCG
ACGTCGGGGCCGGCGTACTGGGCTCCGGCGCATGCCGTGCCGCCGCCGCCGGAGAATGGC
GCCGGAGCATTGAGGGAGTAA