Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0382700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:18770713:18776106:1 gene:Os04g0382700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 11 domain containing protein. (Os04t0382700-01);ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11); transporter. (Os04t0382700-02)
Sequence	ATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGCGTGCCC GGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCCGTCGGC TGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGCTTCCAG GCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAATGTTCTTATCACG GTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTTTTCGAT CTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAAATTTTG CGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGTGGTTCTAGAAGAA GCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGCATCAAA GGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGCACCAGT TTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTTGCTGTA ACTCCTAGTTCAATAACCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAAACGCTT GATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGATCTGATTATT GGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGGGCCTTT GATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATTGAAGAT CAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATTGCACAT AGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATTCTGATA ATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTTGATATG TTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAGGCCGAT CCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAACAGGAA TATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCATATGTT ATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAGAAGTTA CATGATCGAGGGTTAGCATCCAAAGACCACACCACCCTTCTGTTGAATTGCTATACTAAA CTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGTGAAATC AAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAGCATGCT ATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTGGAGGAT CTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAAGCAGGT CTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACAGTTGAA ATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCAAATAGC ATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACACAGCCCG AAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCTGCTCAA ACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTCCCTTCT ATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAAGAAGTT GCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGATATGAAT GTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCTGCATGG ACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGTAATGCA AATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAAGAAGTT ATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAGAAGCTA GGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATATTTTAGT GAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAAAAGGAG GATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTG TCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAA GATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAGATAGAA GACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGACGTGCACCTTTACG CTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGG GACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAG CAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCA AAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCC ATTCCTCCTGAAAATGGCCGATAA

Peptide Sequence

PEP ID	Os04t0382700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:18770713:18776106:1 gene:Os04g0382700 transcript:Os04t0382700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 11 domain containing protein. (Os04t0382700-01);ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11); transporter. (Os04t0382700-02)
Sequence	MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEV ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR

Transcript Sequence

Transcript ID	Os04t0382700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:18770713:18776106:1 gene:Os04g0382700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein sorting-associated protein 11 domain containing protein. (Os04t0382700-01);ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11); transporter. (Os04t0382700-02)
Sequence	GGTGGAGTTCACTTCGAGGATTTCGCGTCCGATCCGAATCCAGTCCGATCCAATCCAATC CGACCCAGCGATCGAGCCGCACGCCCCTCCTCCGCCGGTCGCCGCCGCCGCCGCAGCGAT CCCTCGCCGGAGAAAGGCCTTCCGCCCTCCCTCCGGCGGGCTCCCCCTCTCTCTCTCTGC TCGGGCAGCGGGGATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGG GCGGGGCGTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCG CGTCGCCGTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTC CTACGGCTTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAA TGTTCTTATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCT AAAAGTTTTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTG TGTTCAAATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGT GGTTCTAGAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCAT TTATTGCATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGA GGATGGCACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCA GTTATTTGCTGTAACTCCTAGTTCAATAACCTTGTTTAGCTTGCATGATCATCCACCGAG GAGGCAAACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCAT GGATCTGATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCC TTGCTGGGCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATG CATTATTGAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCG GTTGATTGCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATA TATTATTCTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAG TAAGCTTGATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAG TCAACAGGCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTA TGGAAAACAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGA ACCATCATATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTA TTTAGAGAAGTTACATGATCGAGGGTTAGCATCCAAAGACCACACCACCCTTCTGTTGAA TTGCTATACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGG GGTAGGTGAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATA TCATGAGCATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAAT TTTACTGGAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGC GAATCAAGCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGC TGAAACAGTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAG AGGTTCAAATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATT TGTACACAGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGA CTCACCTGCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTT AAGTTTCCCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAA AGGTAAAGAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAA GGAAGATATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCT CAAGTCTGCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTAT CATCTGTAATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACT ATTCAAAGAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTG CTGTAAGAAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTT GAAATATTTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTA TATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCC ATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAA GCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAA AAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGAC GTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCT TCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGT CATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCA GCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGT GAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAAGGAGTGGAAGAAAACCAGCTCTA TTACTCCCCATGTACAGGATTTGACGATGTTTTATCTCCTTTCCCATGGTGTTTTGTCAT CATGTGAGTTTCAGGGTCCATCACACAGCATGTGCAGGCCTTTAATAGCGAGTTCCTCTA GTGTACCAACTTATGTATGCTTTCTGGCCTATTTTTTGTGGCCGTGCTATGGAGTTCTGT TGTGCTTGACATTGTAAATCCTTCTGTTGGCAAACGCTGCCTAGTTTTTGGCATTTAGTT TTGATGGAAGAAGATTCACGGCC