Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0379700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:18551379:18552402:-1 gene:Os04g0379700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RVDE1 description:Similar to Violaxanthin de-epoxidase. (Os04t0379700-01)
Sequence	TCAAGTGGCCTCAATCCCACTTTCGACACATTCGATTGCCAACTTCACGAGTTCCGTGTC GAGGGAGACAAACTTATAGCGAACTTGACATGGAGAATTCGCACCCCCGACTCTGGCTTC TTCACCAGAACAGCCATACAGCGGTTTGTGCAGGACCCAGCACAACCCGCGATCCTCTAT AACCATGACAACGAGTTCCTGCACTATCAAGATGACTGGTACATTATCTCATCCAAAGTA GAGAACAAGGAAGATGACTACATTTTCGTGTACTACCGCGGCAGAAATGATGCGTGGGAT GGATATGGAGGTGCTGTTCTGTACACCAGAAGCAAAGTTGTGCCTGAATCAATAGTACCT GAGCTAGAAAGGGCGGCAAAAAGCGTAGGTCGTGACTTCTCCACATTCATCAGAACCGAC AACACCTGCGGTCCTGAGCCACCTCTTGTGGAGAGAATAGAGAAGACCGTCGAGCAAGGA GAGAAGACCATCATCAGGGAAGTGCAGGAGATCGAGGGCGAGATCGAGGGAGAGGTGAAG GAGCTGGAGGAGGAGGAGGTCACATTGTTCAAGAGGTTGACAGATGGCCTCATGGAGGTG AAACAGGACTTGATGAACTTCTTTCAGGGGCTAAGCAAGGAGGAGATGGAGCTTTTGGAT CAGATGAACATGGAAGCAACTGAGGTTGAGAAGGTCTTCAGCCGCGCCCTGCCAATAAGG AAACTAAGGTAG

Peptide Sequence

PEP ID	Os04t0379700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:18551379:18552402:-1 gene:Os04g0379700 transcript:Os04t0379700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RVDE1 description:Similar to Violaxanthin de-epoxidase. (Os04t0379700-01)
Sequence	SSGLNPTFDTFDCQLHEFRVEGDKLIANLTWRIRTPDSGFFTRTAIQRFVQDPAQPAILY NHDNEFLHYQDDWYIISSKVENKEDDYIFVYYRGRNDAWDGYGGAVLYTRSKVVPESIVP ELERAAKSVGRDFSTFIRTDNTCGPEPPLVERIEKTVEQGEKTIIREVQEIEGEIEGEVK ELEEEEVTLFKRLTDGLMEVKQDLMNFFQGLSKEEMELLDQMNMEATEVEKVFSRALPIR KLR

Transcript Sequence

Transcript ID	Os04t0379700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:18551379:18552402:-1 gene:Os04g0379700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RVDE1 description:Similar to Violaxanthin de-epoxidase. (Os04t0379700-01)
Sequence	TCAAGTGGCCTCAATCCCACTTTCGACACATTCGATTGCCAACTTCACGAGTTCCGTGTC GAGGGAGACAAACTTATAGCGAACTTGACATGGAGAATTCGCACCCCCGACTCTGGCTTC TTCACCAGAACAGCCATACAGCGGTTTGTGCAGGACCCAGCACAACCCGCGATCCTCTAT AACCATGACAACGAGTTCCTGCACTATCAAGATGACTGGTACATTATCTCATCCAAAGTA GAGAACAAGGAAGATGACTACATTTTCGTGTACTACCGCGGCAGAAATGATGCGTGGGAT GGATATGGAGGTGCTGTTCTGTACACCAGAAGCAAAGTTGTGCCTGAATCAATAGTACCT GAGCTAGAAAGGGCGGCAAAAAGCGTAGGTCGTGACTTCTCCACATTCATCAGAACCGAC AACACCTGCGGTCCTGAGCCACCTCTTGTGGAGAGAATAGAGAAGACCGTCGAGCAAGGA GAGAAGACCATCATCAGGGAAGTGCAGGAGATCGAGGGCGAGATCGAGGGAGAGGTGAAG GAGCTGGAGGAGGAGGAGGTCACATTGTTCAAGAGGTTGACAGATGGCCTCATGGAGGTG AAACAGGACTTGATGAACTTCTTTCAGGGGCTAAGCAAGGAGGAGATGGAGCTTTTGGAT CAGATGAACATGGAAGCAACTGAGGTTGAGAAGGTCTTCAGCCGCGCCCTGCCAATAAGG AAACTAAGGTAGCTTCTAGTTGCCACTCCAGCAAGTACAAGGCAACAAGTAATGCTCAAA ATATATTCTATTCACCAAGGCAATACCAATAGTAACAGATTATTCTACAGAGAACAAAGA ATTTTTGAATCTGCTAATGCATCCCCATTATTACAATACATTTCCAGCTTAGAGATATGT AAAGTATCAGTAACTATGTAACTTCCATTAAAAAAAGGTATATAGTGAACTTTGT