Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0378575-00
CDS Infomation	cds chromosome:IRGSP-1.0:4:18490353:18494159:1 gene:Os04g0378575 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NBS-LRR protein (Fragment). (Os04t0378575-00)
Sequence	ATGGCCTTGGCTTTCGCCGGCAAATCGGTGGCTGTGTCGGCCATCTCCATGATTGTCCGC AAGTCTTTCGATTACCTTGAGAAGTATGCGAAGGCGGAGGGGATGAAGTCGGTGCAGGAG CGGCTTGAGAGGACTCTCCCACAAGTCCAAGTTGTCTTTGATGCAATTGATATGGAGAGG ATAAGGGATCAGAGCGAGGCGCTTGATGCCTGGCTTTGGCAGCTCAGGGATGCCGTCGAG GAGGCAGAGGATGTGCTCGATGAGGTGGAGTACTACAAGCTTGAGAAAAAGGTGAAAACT AGAGGTAACAAGGTGAGCAGCTCTCTGTACAAGTGCAAGAGGGTGGTTGTTCAGCAATTC AATAGTACTTTTAAGGCTGGAACTTTTAAGAGATTGTTGGATGCCATCAGAAAACTTGAT GAAATTGTTGTTGGTGTGGAGCGTTTTGTTCTACTCGTGGACCGGCTGGATTCTTGTACT TCAAGGCACGTATGTCATCAGGAGGTTAGTAATCCTCGTGAGACTAGCTCCTTCAGTGTT GATGAAATTGTAATTGGCCGTGATACTGAGAGGGTTAAGATTGTTGAATGGCTGATTGAA CAAGACAACGTTCATGACCATGATGTTTGTGCTGTAAATGCTTTTTCTATAGTTGGCATA GGTGGCATGGGCAAGACCACGCTAGCACAGGCAATCTACAATGATCAAAGAGTGAAGCAG TGCTTTGATCAGGCTATGTGGATTTGTGTGTCCAATGACTTTGATGTCCCTGCTCTGATG AAAAAGATTATACAAGAAATCACTAGAGAAGGTACTAATGTTACTAATTTCAATACACTT CAAGAAATCGTCAGAGAGAATCTGAAATCCAAGAAGTTCCTTCTTGTATTTGATGATGTA TGGAATGATGAGAGAAGGCCTGACTGGGAGAAACTAGTAGCTCCTCTGAAATTTGGTCAA AAGGGAAGCAAAATCTTATTGACAACCCGGATGGAATCAGTGGTAGATATTGTTGAAAGG GTACTAGGAGGAAGAACCAAGTCTCTACGATTGGAGGGACTGCATGACAAAGATCTTTTA GCAATTTTTAACAGGCATGCTTTTTTCGAAGTAAATCCTGATGATTATTTCAACCTACAG GAGATAGGCAAGAAAATTACTAGGAAATTGAGTGGATGCCCATTAGCAGCAAAGATCATG GGTGGGCTGTTGAACAACTCTCTGGATAGCATATACTGGAACAGAATGCTTAGAGAAAAT ATCTCTAATATTGAGCATAATAGTGAAGGCATTATGAAAATTTTAAGATTAAGTTATCAT CATCTGGCCCCACATCTACAGGCTTGCTTCAGATATTGTGGCATGTTCCGAGAAGATTAC TGGTTTCGAAAGGATGAGCTGATTAACTTTTGGATGGGTTCAGGACTAATTCAGCTATCT GCAAATGAAAACCAGAGGCCAGAGGATATAGGAGAGTTTTATTTGGGTATACTAACAAAG AAGTCTTTCTTTGAACTGCAGTTAAACAAATCCACTAATTTGTATGAAGGCTATGGTGAG TGTACTAATGAACACTATGTTATGCATGATTTATTGCATGAACTTGCACGTACGGTTTCC AGAAAGGAGTGCATGAGGATTTCTAGTGATGAATATGGCAGTATTCCGAGAACAGTTCGG CATGCAGCAATTAGCATAGTAAATCATGTAGTGATCACAGATTTCTCTTCGCTTAAGAAC TTGCGGACCCTCCTCATATCATTTGACAAAACAATACATGAAAGGGATCAATGGATTGTA CTGAAAAAAATGCTGAAGTCAGCAACAAAACTGCGTGTTGTGCACATACAGAATTCGTCG CTTTTCAAGCTGCCTGACAAATTTGGTAATTTAATGCACCTTCGCTATCTGTATCACTCG GAATCGCAGAAGAAAGTGGGGAAATATTCCTTTTGGTGTCCATGTTCTATATACAAATTA TATCATCTTCAAATGATACAGTTGAATAGATGTCTGTTGGTATCCTGGCGATTGGGAAAT CTAATTAGTCTGAGACATATATACTTTTCTGGTACTATATATGGATTCTCCCCTTACATT GGGCATTTGACTTCCCTTCAAGACCTACATGAAGTTAATGTCCCACCTAAGTGTGGTTTC ATAGCAAGCGAGCTCATGGATCTGAAAGATCTCCGCTATTTGTGTATCCGTTGTCTTGAG AATGTCAATGCAGACGAAGCTACTTTGGCTAAGCTGGGTGAAAAGGAAAATCTCATTATG TTGTCACTCACTTGGAAAAACAGCCAACAGGAATCAGACACAGAGGAACGAGTACTGAAT AACCTTCAACCTCACATGAACCTCACCAAGTTAAAGATCAAAGGATATAACGGTTCCAGA TCTCCATGTTGGTTGGGAAACACCACTATCATCAATTTGACATATCTCTATATCTCTAAT TGCAGTTACTGGCAGCATCTTCCACCTCTAGGCGAACTTCCTTCCCTGAAATATCTGTAC TTAATCTGCTTGAACTCAGTGAAAAGAATAGATAGTTCCTTCTACGGGTGTGAGCGACCT TTTGGCTTCCCATCTCTTGAGTATCTATTTATTGAACATCTTCCAGCACTAGAAGAGTGG GTTGAAATGGAAGGCGAGCATCTGTTTCCCCGGCTTAAGGCACTAGTCGTCAGACACTGC AAAGAATTGAGAAATGTACCAACACTACCATCCACTGTTAATTATCTTGAAATGGATAGT GTTGGTTTGACTACTCTTCATGAACCCTATGTGCCTAATGAAAATGCAGAACCCCAAAAG CCATCACTCTCCAGGCTGAAGATCTGTCACTGCCCATACCTGGAAACACTTGAGCAACTT AACCAGTTTCTTTCTCTGGAGGAACTACATATTGAACATTGTGAAAATCTTGTTCAATTG CCGATGGATCACTTACAGATGCTCTCCTTTCTAAAACACATGACAGTGTTGGGATGCCCA AAGTTAATGGTCCCTCCGGCAACCATCAGGTTGCCGTTGCCAACGAAAAAACTTCATGTT GGGTCATGTGGTACTTATGAGACTTGTCTGGTTAACTCATTGTGTGGTCTTACTTCTCTT ACTACTTTGATGCTATATGGTTGTGATATAGCAGCACTTCCACCTGTTGAAGTGTGCAAG AGTTTGATAGCGCTAAGTTGTTTGGAAATCGTAAGCTGCCACGAACTTGCGGATTTAAAT GGCATGGAAGAGCTAACATCCCTCACAGAGTTGAAGGTGATTGGGTGCAACAAGCTTGAA GAGCTTCCTGTCGTTTCATCTCAGCGGTTTCAAGCCTCTGAACACAACCAAGTTGTCACT GCCTGTACTTCATACCTTAGGAAACTTAAGAGACTGCAAATTAGCGATCCATTTGTCTTG CAATGGGCCCCACTGAGAAGCGTCACCTCAGTTACAAATATGACCATCAACAGCTGTAGA TGCTTACCTGAGGAGTGGTTGATGCAAAACTGCAATAATCTTCAACGCATTGGAGTGAGG GATGCTTCCCATCTGGAATTTCTGCCCTCAATCATGGCAAGCCTCACCTCCCTTGAATCC TTAGAGTTTACAAGAGTTATGTTAATCCAGTCACTTCCAGAACTTCCTTCCTCCTTGCGG AGGCTTCAAATCCTTGGTTGTAACCCGGTATTAATGCGGCGATGTCGAAAGAGTAGAGGT CGTGATTGGCACAAGATTGCGCATATCCCAGATCTGCGGATTGTAGAAGATATACCATCG TCATATTCATGGAATTCATACTTGTAA

Peptide Sequence

PEP ID	Os04t0378575-00
PEP Infomation	pep chromosome:IRGSP-1.0:4:18490353:18494159:1 gene:Os04g0378575 transcript:Os04t0378575-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NBS-LRR protein (Fragment). (Os04t0378575-00)
Sequence	MALAFAGKSVAVSAISMIVRKSFDYLEKYAKAEGMKSVQERLERTLPQVQVVFDAIDMER IRDQSEALDAWLWQLRDAVEEAEDVLDEVEYYKLEKKVKTRGNKVSSSLYKCKRVVVQQF NSTFKAGTFKRLLDAIRKLDEIVVGVERFVLLVDRLDSCTSRHVCHQEVSNPRETSSFSV DEIVIGRDTERVKIVEWLIEQDNVHDHDVCAVNAFSIVGIGGMGKTTLAQAIYNDQRVKQ CFDQAMWICVSNDFDVPALMKKIIQEITREGTNVTNFNTLQEIVRENLKSKKFLLVFDDV WNDERRPDWEKLVAPLKFGQKGSKILLTTRMESVVDIVERVLGGRTKSLRLEGLHDKDLL AIFNRHAFFEVNPDDYFNLQEIGKKITRKLSGCPLAAKIMGGLLNNSLDSIYWNRMLREN ISNIEHNSEGIMKILRLSYHHLAPHLQACFRYCGMFREDYWFRKDELINFWMGSGLIQLS ANENQRPEDIGEFYLGILTKKSFFELQLNKSTNLYEGYGECTNEHYVMHDLLHELARTVS RKECMRISSDEYGSIPRTVRHAAISIVNHVVITDFSSLKNLRTLLISFDKTIHERDQWIV LKKMLKSATKLRVVHIQNSSLFKLPDKFGNLMHLRYLYHSESQKKVGKYSFWCPCSIYKL YHLQMIQLNRCLLVSWRLGNLISLRHIYFSGTIYGFSPYIGHLTSLQDLHEVNVPPKCGF IASELMDLKDLRYLCIRCLENVNADEATLAKLGEKENLIMLSLTWKNSQQESDTEERVLN NLQPHMNLTKLKIKGYNGSRSPCWLGNTTIINLTYLYISNCSYWQHLPPLGELPSLKYLY LICLNSVKRIDSSFYGCERPFGFPSLEYLFIEHLPALEEWVEMEGEHLFPRLKALVVRHC KELRNVPTLPSTVNYLEMDSVGLTTLHEPYVPNENAEPQKPSLSRLKICHCPYLETLEQL NQFLSLEELHIEHCENLVQLPMDHLQMLSFLKHMTVLGCPKLMVPPATIRLPLPTKKLHV GSCGTYETCLVNSLCGLTSLTTLMLYGCDIAALPPVEVCKSLIALSCLEIVSCHELADLN GMEELTSLTELKVIGCNKLEELPVVSSQRFQASEHNQVVTACTSYLRKLKRLQISDPFVL QWAPLRSVTSVTNMTINSCRCLPEEWLMQNCNNLQRIGVRDASHLEFLPSIMASLTSLES LEFTRVMLIQSLPELPSSLRRLQILGCNPVLMRRCRKSRGRDWHKIAHIPDLRIVEDIPS SYSWNSYL

Transcript Sequence

Transcript ID	Os04t0378575-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:18490353:18494159:1 gene:Os04g0378575 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NBS-LRR protein (Fragment). (Os04t0378575-00)
Sequence	ATGGCCTTGGCTTTCGCCGGCAAATCGGTGGCTGTGTCGGCCATCTCCATGATTGTCCGC AAGTCTTTCGATTACCTTGAGAAGTATGCGAAGGCGGAGGGGATGAAGTCGGTGCAGGAG CGGCTTGAGAGGACTCTCCCACAAGTCCAAGTTGTCTTTGATGCAATTGATATGGAGAGG ATAAGGGATCAGAGCGAGGCGCTTGATGCCTGGCTTTGGCAGCTCAGGGATGCCGTCGAG GAGGCAGAGGATGTGCTCGATGAGGTGGAGTACTACAAGCTTGAGAAAAAGGTGAAAACT AGAGGTAACAAGGTGAGCAGCTCTCTGTACAAGTGCAAGAGGGTGGTTGTTCAGCAATTC AATAGTACTTTTAAGGCTGGAACTTTTAAGAGATTGTTGGATGCCATCAGAAAACTTGAT GAAATTGTTGTTGGTGTGGAGCGTTTTGTTCTACTCGTGGACCGGCTGGATTCTTGTACT TCAAGGCACGTATGTCATCAGGAGGTTAGTAATCCTCGTGAGACTAGCTCCTTCAGTGTT GATGAAATTGTAATTGGCCGTGATACTGAGAGGGTTAAGATTGTTGAATGGCTGATTGAA CAAGACAACGTTCATGACCATGATGTTTGTGCTGTAAATGCTTTTTCTATAGTTGGCATA GGTGGCATGGGCAAGACCACGCTAGCACAGGCAATCTACAATGATCAAAGAGTGAAGCAG TGCTTTGATCAGGCTATGTGGATTTGTGTGTCCAATGACTTTGATGTCCCTGCTCTGATG AAAAAGATTATACAAGAAATCACTAGAGAAGGTACTAATGTTACTAATTTCAATACACTT CAAGAAATCGTCAGAGAGAATCTGAAATCCAAGAAGTTCCTTCTTGTATTTGATGATGTA TGGAATGATGAGAGAAGGCCTGACTGGGAGAAACTAGTAGCTCCTCTGAAATTTGGTCAA AAGGGAAGCAAAATCTTATTGACAACCCGGATGGAATCAGTGGTAGATATTGTTGAAAGG GTACTAGGAGGAAGAACCAAGTCTCTACGATTGGAGGGACTGCATGACAAAGATCTTTTA GCAATTTTTAACAGGCATGCTTTTTTCGAAGTAAATCCTGATGATTATTTCAACCTACAG GAGATAGGCAAGAAAATTACTAGGAAATTGAGTGGATGCCCATTAGCAGCAAAGATCATG GGTGGGCTGTTGAACAACTCTCTGGATAGCATATACTGGAACAGAATGCTTAGAGAAAAT ATCTCTAATATTGAGCATAATAGTGAAGGCATTATGAAAATTTTAAGATTAAGTTATCAT CATCTGGCCCCACATCTACAGGCTTGCTTCAGATATTGTGGCATGTTCCGAGAAGATTAC TGGTTTCGAAAGGATGAGCTGATTAACTTTTGGATGGGTTCAGGACTAATTCAGCTATCT GCAAATGAAAACCAGAGGCCAGAGGATATAGGAGAGTTTTATTTGGGTATACTAACAAAG AAGTCTTTCTTTGAACTGCAGTTAAACAAATCCACTAATTTGTATGAAGGCTATGGTGAG TGTACTAATGAACACTATGTTATGCATGATTTATTGCATGAACTTGCACGTACGGTTTCC AGAAAGGAGTGCATGAGGATTTCTAGTGATGAATATGGCAGTATTCCGAGAACAGTTCGG CATGCAGCAATTAGCATAGTAAATCATGTAGTGATCACAGATTTCTCTTCGCTTAAGAAC TTGCGGACCCTCCTCATATCATTTGACAAAACAATACATGAAAGGGATCAATGGATTGTA CTGAAAAAAATGCTGAAGTCAGCAACAAAACTGCGTGTTGTGCACATACAGAATTCGTCG CTTTTCAAGCTGCCTGACAAATTTGGTAATTTAATGCACCTTCGCTATCTGTATCACTCG GAATCGCAGAAGAAAGTGGGGAAATATTCCTTTTGGTGTCCATGTTCTATATACAAATTA TATCATCTTCAAATGATACAGTTGAATAGATGTCTGTTGGTATCCTGGCGATTGGGAAAT CTAATTAGTCTGAGACATATATACTTTTCTGGTACTATATATGGATTCTCCCCTTACATT GGGCATTTGACTTCCCTTCAAGACCTACATGAAGTTAATGTCCCACCTAAGTGTGGTTTC ATAGCAAGCGAGCTCATGGATCTGAAAGATCTCCGCTATTTGTGTATCCGTTGTCTTGAG AATGTCAATGCAGACGAAGCTACTTTGGCTAAGCTGGGTGAAAAGGAAAATCTCATTATG TTGTCACTCACTTGGAAAAACAGCCAACAGGAATCAGACACAGAGGAACGAGTACTGAAT AACCTTCAACCTCACATGAACCTCACCAAGTTAAAGATCAAAGGATATAACGGTTCCAGA TCTCCATGTTGGTTGGGAAACACCACTATCATCAATTTGACATATCTCTATATCTCTAAT TGCAGTTACTGGCAGCATCTTCCACCTCTAGGCGAACTTCCTTCCCTGAAATATCTGTAC TTAATCTGCTTGAACTCAGTGAAAAGAATAGATAGTTCCTTCTACGGGTGTGAGCGACCT TTTGGCTTCCCATCTCTTGAGTATCTATTTATTGAACATCTTCCAGCACTAGAAGAGTGG GTTGAAATGGAAGGCGAGCATCTGTTTCCCCGGCTTAAGGCACTAGTCGTCAGACACTGC AAAGAATTGAGAAATGTACCAACACTACCATCCACTGTTAATTATCTTGAAATGGATAGT GTTGGTTTGACTACTCTTCATGAACCCTATGTGCCTAATGAAAATGCAGAACCCCAAAAG CCATCACTCTCCAGGCTGAAGATCTGTCACTGCCCATACCTGGAAACACTTGAGCAACTT AACCAGTTTCTTTCTCTGGAGGAACTACATATTGAACATTGTGAAAATCTTGTTCAATTG CCGATGGATCACTTACAGATGCTCTCCTTTCTAAAACACATGACAGTGTTGGGATGCCCA AAGTTAATGGTCCCTCCGGCAACCATCAGGTTGCCGTTGCCAACGAAAAAACTTCATGTT GGGTCATGTGGTACTTATGAGACTTGTCTGGTTAACTCATTGTGTGGTCTTACTTCTCTT ACTACTTTGATGCTATATGGTTGTGATATAGCAGCACTTCCACCTGTTGAAGTGTGCAAG AGTTTGATAGCGCTAAGTTGTTTGGAAATCGTAAGCTGCCACGAACTTGCGGATTTAAAT GGCATGGAAGAGCTAACATCCCTCACAGAGTTGAAGGTGATTGGGTGCAACAAGCTTGAA GAGCTTCCTGTCGTTTCATCTCAGCGGTTTCAAGCCTCTGAACACAACCAAGTTGTCACT GCCTGTACTTCATACCTTAGGAAACTTAAGAGACTGCAAATTAGCGATCCATTTGTCTTG CAATGGGCCCCACTGAGAAGCGTCACCTCAGTTACAAATATGACCATCAACAGCTGTAGA TGCTTACCTGAGGAGTGGTTGATGCAAAACTGCAATAATCTTCAACGCATTGGAGTGAGG GATGCTTCCCATCTGGAATTTCTGCCCTCAATCATGGCAAGCCTCACCTCCCTTGAATCC TTAGAGTTTACAAGAGTTATGTTAATCCAGTCACTTCCAGAACTTCCTTCCTCCTTGCGG AGGCTTCAAATCCTTGGTTGTAACCCGGTATTAATGCGGCGATGTCGAAAGAGTAGAGGT CGTGATTGGCACAAGATTGCGCATATCCCAGATCTGCGGATTGTAGAAGATATACCATCG TCATATTCATGGAATTCATACTTGTAA