Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0378200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:18468243:18473626:1 gene:Os04g0378200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif SAM domain containing protein. (Os04t0378200-01)
Sequence

ATGTACGCGGACCAGATCTCCACCGGCCGGAAGCGCTCCATCCACGACCGCATCGACGGC
GACCAGCCCGCCGCCCGCGCTGGCGCCGGCGCCGGCGGCCGGGGGGCCCGTAACCCGCCG
TCCAAGAGGCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTACCGGGAAGACGAT
GAACCAGCTTCAAAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGC
TCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTT
TCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCATCATCA
GAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAG
AAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTT
GATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAG
GTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCG
ATGGGTCCCCGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTAG

Peptide Sequence

PEP ID

Os04t0378200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:18468243:18473626:1 gene:Os04g0378200 transcript:Os04t0378200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif SAM domain containing protein. (Os04t0378200-01)
Sequence

MYADQISTGRKRSIHDRIDGDQPAARAGAGAGGRGARNPPSKRQRQTDEKWKHDLYREDD
EPASKSIDPRDLRLKLQKKSSQQSFAGQRGSGVRDLREMLSGTMHPQPVNADPPKAKPSS
EIVKVTRRENADVMPVRQSKKVPKPTSSKKTSQPKADSPLDIFLKSLGLEKYSITFQAEE
VDMAALRHMTDSDLKALGIPMGPRKKIMLALESRA

Transcript Sequence

Transcript ID

Os04t0378200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:18468243:18473626:1 gene:Os04g0378200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sterile alpha motif SAM domain containing protein. (Os04t0378200-01)
Sequence

ATTCTTCTCCTTCTTCTCCCTCCGCGTCGCATTCGCATCACCCCCCCGAAACCCTAGACC
CACCACCACCACCACCATCCCCGAGCTCGCGGAGAGGCAGCGAGAGCGAGAGGTAGCTGC
TAGTAGGCGTCGGGCGAGGAGATGTACGCGGACCAGATCTCCACCGGCCGGAAGCGCTCC
ATCCACGACCGCATCGACGGCGACCAGCCCGCCGCCCGCGCTGGCGCCGGCGCCGGCGGC
CGGGGGGCCCGTAACCCGCCGTCCAAGAGGCAACGGCAAACTGATGAAAAATGGAAGCAT
GATCTTTACCGGGAAGACGATGAACCAGCTTCAAAATCAATTGATCCACGGGATTTGCGA
TTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTA
CGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCT
CCAAAGGCAAAGCCATCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTA
ATGCCTGTACGTCAAAGTAAGAAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAG
CCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCG
ATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGAT
CTTAAAGCTTTGGGCATTCCGATGGGTCCCCGGAAGAAGATCATGCTTGCCTTGGAATCG
AGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTATGCT
CCTCTGCTTGCTTGGTAAACCCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAA
AGCGCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGAGCATTCCGCATTCTCAGCCAG
TTTAGGATGTTTTAGAGGCTGGATGAAGGTTGACAATGTAATATTATTAGTCTCCTGTTA
ATTTTTATCTGGTCGGCTTGCTTGTCAGGACTCAGGACCAGCTGATT