Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0366000-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:17667431:17671131:-1 gene:Os04g0366000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0110B10.6 protein. (Os04t0366000-00)
Sequence

ATGAGGATGCCTATGTCATACGAATGCTACAACATGACGAAACATGACATGGACTGCGTC
GACAAGGCAAATCTGAGCTTGACGGGAAGTCCTTTCACATTCTCTAACAGTGCCAACAAG
TTCACGGTCTTTGGATGTCGAATGCTTGGTTACCTCGGTCCTGGTGGGCAGAGCGCCGTA
GGCAGTAACCTAACAATTGGCTGTGCCACCAGTTGTGGCCAGGGTGATGATCTTTTAAGC
ATCAATGGTGAAGGATGCTCTGGGATAGGCTGCTGTCAGACGGCCATCCCCAAAGGGATC
AAGCACTACAAGGTTTGGTTTGACACACACTTCAACACATCAGTCATCCACAATTGGTCC
CGTTGCAGTTATGGAGCGTTAGTGGAGGAGGCCAGCTTCAAATTCTCCACGATTTATGCC
ACGTCATCGAATTTCAGCAACCCTTTCGGTGGTGAGCCTCCATTTGTGGTGGACTGGGTT
GTAGCAAACAATACCTGCGCCGAAGCAAGAAAACATTTAGATTCATATGCATGTGCTAGC
AGCAACAGCGTGTGTATTGACTCGAGCAATGGACCAGGATACTTCTGCAAATGTTCTCAA
GGATTTGAGGGGAATCCTTACCTTCAGGGTCATGATGGTTGCCAAGATATTAACGAGTGT
GAGGATTCTAATAAGTACCCTTGCTATGGGAAGTGCATCAACAAACTTGGAGGATTCGAT
TGTTTTTGCCCTGCGGGTACTCGAGGAGATGCTTCTGTTGGACCATGCCGAAAAGAGTTT
CCACTAGCATTCGGTATTGCAATTGGCCTAGGAGTTGGTTTCGGAATTCTTCTTCTTGTC
TTAACCGTAGCATTCCTTGTCCGTAAAAGAAAGAATGATATCCAAAAGCAATTAAGGAAG
AAATATTTTCGAAAAAATCAAGGCCTTCTTCTAGAGCAACTTATATCATCTGATGAATGC
GCTACTGATAGCACAAAAATTTTCACCCTAGAAGAGCTGAAAGAGGCAACAAATAACTTT
GATCCAGCACGTGTTCTTGGTAGTGGAGGGCATGGTATGGTTTACAAGGGCATATTGTCC
GACCAGCGTGTGGTAGCTATAAAAAAACCAAACATCATTAGGGAAGAAGAGATTAGTCAG
TTCATCAACGAAGTTGCAATACTATCGCAGATAAATCATCGGAACATTGTAAAACTATTT
GGATGTTGTCTTGAAACCGAAGTCCCTCTACTGGTGTATGACTTTGTCCCAAATGGCTCA
CTAAATTGCATTATTCACGCTGATCCAAGTATGAGAGAATTCACATTGTCCTGGGATCAG
TGCTTGAGAATTGCCACCGAAGCTGCGGGAGCTTTATATTACCTCCACTCTGCAGCATCA
GTATCTGTTTTACATCGTGACGTGAAATCTTCGAATATACTTTTGGATGCCAACTACACC
GCTAAGGTATCAGATTTTGGGGTATCAAGACTGATTCCTAATGATCAAACCCATGTTTTT
ACAAATATCCAAGGCACATTTGGGTACTTAGATCCTGAGTACTACCATACCGGGCATCTA
AATGAGAAGAGTGATGTCTACAGTTTTGGTGTTGTTCTTTTAGAGCTGCTTCTCAGGAAG
CAACCTATTTTTGACAGTGAATCTGGTTCAAAGAAAAATTTATCTATTTACTTCCTTTCT
GAGCTAAAAGGAAGGCCAGTTGCAGAGATAGCTGCTCCTGAAGTTCTTGAAGAAGCAACT
GAGGATGAAATTAACATTGTCGCCTCAATTGCCCGGGCATGCTTGAGGCTTAGAGGTGAA
GAACGGCCAACTATGAAGCAAGTAGAGATGTCATTACAATCTATAAGAAATAAAGGTTTC
AGATCAGGCACAGTTTCTCCAGAAGATAGCGATGAGCTGCAAACTCCACAATCAGAAGGA
CATCCTCCTTCTCCGCCCGTATGCGCCGAGAATGACTCCTGCTCCTGCCACCCATCGGCG
TCGGGATTCCTACTCTTCAGCCAGTCGGCGCTGGGATTCTACTCCGCCAGGATCGACGAG
TCCTCGCCGCCGCCTAGATCGACAACTTCAACGCCTGGACTTCAACTCCGCCACCACCGG
GAATGA

Peptide Sequence

PEP ID

Os04t0366000-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:17667431:17671131:-1 gene:Os04g0366000 transcript:Os04t0366000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0110B10.6 protein. (Os04t0366000-00)
Sequence

MRMPMSYECYNMTKHDMDCVDKANLSLTGSPFTFSNSANKFTVFGCRMLGYLGPGGQSAV
GSNLTIGCATSCGQGDDLLSINGEGCSGIGCCQTAIPKGIKHYKVWFDTHFNTSVIHNWS
RCSYGALVEEASFKFSTIYATSSNFSNPFGGEPPFVVDWVVANNTCAEARKHLDSYACAS
SNSVCIDSSNGPGYFCKCSQGFEGNPYLQGHDGCQDINECEDSNKYPCYGKCINKLGGFD
CFCPAGTRGDASVGPCRKEFPLAFGIAIGLGVGFGILLLVLTVAFLVRKRKNDIQKQLRK
KYFRKNQGLLLEQLISSDECATDSTKIFTLEELKEATNNFDPARVLGSGGHGMVYKGILS
DQRVVAIKKPNIIREEEISQFINEVAILSQINHRNIVKLFGCCLETEVPLLVYDFVPNGS
LNCIIHADPSMREFTLSWDQCLRIATEAAGALYYLHSAASVSVLHRDVKSSNILLDANYT
AKVSDFGVSRLIPNDQTHVFTNIQGTFGYLDPEYYHTGHLNEKSDVYSFGVVLLELLLRK
QPIFDSESGSKKNLSIYFLSELKGRPVAEIAAPEVLEEATEDEINIVASIARACLRLRGE
ERPTMKQVEMSLQSIRNKGFRSGTVSPEDSDELQTPQSEGHPPSPPVCAENDSCSCHPSA
SGFLLFSQSALGFYSARIDESSPPPRSTTSTPGLQLRHHRE

Transcript Sequence

Transcript ID

Os04t0366000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:17667431:17671131:-1 gene:Os04g0366000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0110B10.6 protein. (Os04t0366000-00)
Sequence

ATGAGGATGCCTATGTCATACGAATGCTACAACATGACGAAACATGACATGGACTGCGTC
GACAAGGCAAATCTGAGCTTGACGGGAAGTCCTTTCACATTCTCTAACAGTGCCAACAAG
TTCACGGTCTTTGGATGTCGAATGCTTGGTTACCTCGGTCCTGGTGGGCAGAGCGCCGTA
GGCAGTAACCTAACAATTGGCTGTGCCACCAGTTGTGGCCAGGGTGATGATCTTTTAAGC
ATCAATGGTGAAGGATGCTCTGGGATAGGCTGCTGTCAGACGGCCATCCCCAAAGGGATC
AAGCACTACAAGGTTTGGTTTGACACACACTTCAACACATCAGTCATCCACAATTGGTCC
CGTTGCAGTTATGGAGCGTTAGTGGAGGAGGCCAGCTTCAAATTCTCCACGATTTATGCC
ACGTCATCGAATTTCAGCAACCCTTTCGGTGGTGAGCCTCCATTTGTGGTGGACTGGGTT
GTAGCAAACAATACCTGCGCCGAAGCAAGAAAACATTTAGATTCATATGCATGTGCTAGC
AGCAACAGCGTGTGTATTGACTCGAGCAATGGACCAGGATACTTCTGCAAATGTTCTCAA
GGATTTGAGGGGAATCCTTACCTTCAGGGTCATGATGGTTGCCAAGATATTAACGAGTGT
GAGGATTCTAATAAGTACCCTTGCTATGGGAAGTGCATCAACAAACTTGGAGGATTCGAT
TGTTTTTGCCCTGCGGGTACTCGAGGAGATGCTTCTGTTGGACCATGCCGAAAAGAGTTT
CCACTAGCATTCGGTATTGCAATTGGCCTAGGAGTTGGTTTCGGAATTCTTCTTCTTGTC
TTAACCGTAGCATTCCTTGTCCGTAAAAGAAAGAATGATATCCAAAAGCAATTAAGGAAG
AAATATTTTCGAAAAAATCAAGGCCTTCTTCTAGAGCAACTTATATCATCTGATGAATGC
GCTACTGATAGCACAAAAATTTTCACCCTAGAAGAGCTGAAAGAGGCAACAAATAACTTT
GATCCAGCACGTGTTCTTGGTAGTGGAGGGCATGGTATGGTTTACAAGGGCATATTGTCC
GACCAGCGTGTGGTAGCTATAAAAAAACCAAACATCATTAGGGAAGAAGAGATTAGTCAG
TTCATCAACGAAGTTGCAATACTATCGCAGATAAATCATCGGAACATTGTAAAACTATTT
GGATGTTGTCTTGAAACCGAAGTCCCTCTACTGGTGTATGACTTTGTCCCAAATGGCTCA
CTAAATTGCATTATTCACGCTGATCCAAGTATGAGAGAATTCACATTGTCCTGGGATCAG
TGCTTGAGAATTGCCACCGAAGCTGCGGGAGCTTTATATTACCTCCACTCTGCAGCATCA
GTATCTGTTTTACATCGTGACGTGAAATCTTCGAATATACTTTTGGATGCCAACTACACC
GCTAAGGTATCAGATTTTGGGGTATCAAGACTGATTCCTAATGATCAAACCCATGTTTTT
ACAAATATCCAAGGCACATTTGGGTACTTAGATCCTGAGTACTACCATACCGGGCATCTA
AATGAGAAGAGTGATGTCTACAGTTTTGGTGTTGTTCTTTTAGAGCTGCTTCTCAGGAAG
CAACCTATTTTTGACAGTGAATCTGGTTCAAAGAAAAATTTATCTATTTACTTCCTTTCT
GAGCTAAAAGGAAGGCCAGTTGCAGAGATAGCTGCTCCTGAAGTTCTTGAAGAAGCAACT
GAGGATGAAATTAACATTGTCGCCTCAATTGCCCGGGCATGCTTGAGGCTTAGAGGTGAA
GAACGGCCAACTATGAAGCAAGTAGAGATGTCATTACAATCTATAAGAAATAAAGGTTTC
AGATCAGGCACAGTTTCTCCAGAAGATAGCGATGAGCTGCAAACTCCACAATCAGAAGGA
CATCCTCCTTCTCCGCCCGTATGCGCCGAGAATGACTCCTGCTCCTGCCACCCATCGGCG
TCGGGATTCCTACTCTTCAGCCAGTCGGCGCTGGGATTCTACTCCGCCAGGATCGACGAG
TCCTCGCCGCCGCCTAGATCGACAACTTCAACGCCTGGACTTCAACTCCGCCACCACCGG
GAATGA