Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0356600-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:17044349:17046921:1 gene:Os04g0356600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0105P02.3 protein. (Os04t0356600-01)
Sequence

GTATTCATCGGGCTGCTTCTCCTCTCCCTGCACGCTCCTCCATATTCCGCTGCCGTCGAC
GATACTCTCGCAGCGGGTCAAGTGCTCGCCGTCGGTGAGAAGCTCGTCTCGAGGAACGGC
AAGTTCGCGCTCGGCTTCTTCCAGCCAAGTGCAATAGCCATCAGTAAGTCATCCAACTAC
ACTAACGCCCTCGGTTGGTACCTTGCCATTTGGTTCAACAAGATCCCGGTTTTCACCACT
GTATGGGTCGCCAATAGGGAGAGGCCAATCACCGTTCCTCGGCTCAATTCAACATGGCTA
AAAATGTCAGGAGATGGCAACCTCTACATCCTAGACCATGCCACTAATTCCATCATCTGG
TCCACTGATCACGTCGTTAATACGACAACGGAAACCGGCATGAACACGAGTGCCACTCTC
CTGAATAGCGGAAACCTCGTAATACGAAACCCGTCAGGTGTAGTCTCGTGGCAGAGCTTC
GACAACCCAACTGACGTTGTTCTTCCCGGTGCCAAGTTTGGCTGGAACAAGGCCACTGGG
TTGAATCGCCTTGGGATATCAAAGAAGAGCCTCATCGATCCAGGCCTTGGATCATACAGT
GTTGAACTAGACACGACTGGTGCCAGAGGGCTGATCCTCAAGCATCGCAACCCTTCCATG
GAGTACTGGTCATCTGATAGAGCACTGATTATACCGGTACTTAAGTCTTTGTTTGAGATG
GATCCACGGACCAGAGGCTTGATTACCCCGGCATACGTCGATAATAGTGAAGAGGAGTAC
TATATCTACACTATGTCGGATGAATCATCCTCTGTGTTTGTGTCGTTAGATGTTAATGGG
CAGATCAAGATGTATGTATGGTCACGAGCAAACCAGTCTTGGCAAAGCATATATGCACAG
CCTGTTGATCCTTGCACCCCCTCTGCTACCTGTGGACCTTTCACCATCTGCAATGGTAAT
TCCACTCAAACATGTGACTGTATGGAGAGTTTTTCTGTGAAGTCACTGTGGGATTGGGAG
CTTGATGATAGAACAGGAGGGTGCATCAGAGATACCCCATTGCATTGTGTAAGTGACAAA
AACATGACAAGTTCAACTGACATGTTCCAACCTATAGGTCTTGTTACATTGCCCTATGAC
CCCCAAATTATGCAAGATGCTACAACTCAGGGTGAATGTGCACAAGCTTGTCTCAGTGAT
TGCTCTTGCACAGCTTATTCTTATCAAAATAGTAGATGCTCTGTCTGGCATGGGAAATTA
CTTAATGTAAATAAAAATGATGGCATTTACATTAATGCGGACAATGTTCTGCACCTTCGT
CTTGCTGCCACAGATTTCCAAGATTTGAGTAAAAACAAAAGAAAAACAAATGTTGAACTT
GTTGTGGGCGCAAGCATTGTTAGTTTTGTGTTAGCATTGATCATGATACTGCTAATGATT
AGAGGGAACAAATTCAAGTGTTGTGGTGCACCATTCCATGACAATGAAGGCCGTGGTGGA
ATAATAGCCTTTCGATACACTGATTTAGCTCATGCTACTAAAAACTTCTCGGAAAAATTA
GGAGCAGGTGGGTTTGGCTCAGTATTCAAAGGAGTGTTAACTAACATGGCTACCATAGCA
GTGAAAAAGCTTGATGGTGCCCATCAAGGTGAGAAGCAATTTAGAGCTGAGGTGAGCTCC
ATTGGAATTATCCAACATATCAACTTAGTCAAATTGATCGGCTATTGTTGTGAGGGTGAT
AAGAGATTGCTGGTATATGAACACATGTTAAATGGTTCTCTTGATGTTCATCTATTTCAG
AGCCATGCAGCTGTCCTAAATTGGATTACCATGCACCAAATAGCCATAGGAGTTGCTAGA
GGATTGTCTTACTTGCATGAGAGTTGTCGTGAATGCATCATACATTGTGACATTAAACCA
GAAAACATACTTCTCGATATATCATATTTTCCAAAACTTGCAGACTTTGGGATGGCAACA
TTTGTAGGAAGAGATTTTAGCCGAGTTCTAACTACTTTTAGAGGAACTGTAGGGTATCTT
GCACCAGAGTGGATTAGCGGAGTTGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGT
ATGGTGCTATTTGAAATCATATCGGGAAGGAGGAATTCTCCTGAAGTACACACTAGTGGT
AATTATGATGCTACTTATTTCCCTGTGCGAGCGATTAATAAGCTGCATGAGGGAGACATG
AGTAGTTTAGTGGACCCAAGATTACATGGTGACTACAATTTGGATGAGGTTGTCAGGGTC
TGCAAAGTTGCTTGTTGGTGTATCCAAGATGATGAGTTCGATCGGCCCACAATGCGTGAA
GTGGTCCGGGTTCTTGAGGGTCTACAAGAGCTTGATATGCCCCCAATGCCAAGGCTACTT
GCGACTTTAACAAACTTCTCTGCTGTGGCTTCAATGTAA

Peptide Sequence

PEP ID

Os04t0356600-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:17044349:17046921:1 gene:Os04g0356600 transcript:Os04t0356600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0105P02.3 protein. (Os04t0356600-01)
Sequence

VFIGLLLLSLHAPPYSAAVDDTLAAGQVLAVGEKLVSRNGKFALGFFQPSAIAISKSSNY
TNALGWYLAIWFNKIPVFTTVWVANRERPITVPRLNSTWLKMSGDGNLYILDHATNSIIW
STDHVVNTTTETGMNTSATLLNSGNLVIRNPSGVVSWQSFDNPTDVVLPGAKFGWNKATG
LNRLGISKKSLIDPGLGSYSVELDTTGARGLILKHRNPSMEYWSSDRALIIPVLKSLFEM
DPRTRGLITPAYVDNSEEEYYIYTMSDESSSVFVSLDVNGQIKMYVWSRANQSWQSIYAQ
PVDPCTPSATCGPFTICNGNSTQTCDCMESFSVKSLWDWELDDRTGGCIRDTPLHCVSDK
NMTSSTDMFQPIGLVTLPYDPQIMQDATTQGECAQACLSDCSCTAYSYQNSRCSVWHGKL
LNVNKNDGIYINADNVLHLRLAATDFQDLSKNKRKTNVELVVGASIVSFVLALIMILLMI
RGNKFKCCGAPFHDNEGRGGIIAFRYTDLAHATKNFSEKLGAGGFGSVFKGVLTNMATIA
VKKLDGAHQGEKQFRAEVSSIGIIQHINLVKLIGYCCEGDKRLLVYEHMLNGSLDVHLFQ
SHAAVLNWITMHQIAIGVARGLSYLHESCRECIIHCDIKPENILLDISYFPKLADFGMAT
FVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLFEIISGRRNSPEVHTSG
NYDATYFPVRAINKLHEGDMSSLVDPRLHGDYNLDEVVRVCKVACWCIQDDEFDRPTMRE
VVRVLEGLQELDMPPMPRLLATLTNFSAVASM

Transcript Sequence

Transcript ID

Os04t0356600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:17044349:17046921:1 gene:Os04g0356600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0105P02.3 protein. (Os04t0356600-01)
Sequence

ACGTATTCATCGGGCTGCTTCTCCTCTCCCTGCACGCTCCTCCATATTCCGCTGCCGTCG
ACGATACTCTCGCAGCGGGTCAAGTGCTCGCCGTCGGTGAGAAGCTCGTCTCGAGGAACG
GCAAGTTCGCGCTCGGCTTCTTCCAGCCAAGTGCAATAGCCATCAGTAAGTCATCCAACT
ACACTAACGCCCTCGGTTGGTACCTTGCCATTTGGTTCAACAAGATCCCGGTTTTCACCA
CTGTATGGGTCGCCAATAGGGAGAGGCCAATCACCGTTCCTCGGCTCAATTCAACATGGC
TAAAAATGTCAGGAGATGGCAACCTCTACATCCTAGACCATGCCACTAATTCCATCATCT
GGTCCACTGATCACGTCGTTAATACGACAACGGAAACCGGCATGAACACGAGTGCCACTC
TCCTGAATAGCGGAAACCTCGTAATACGAAACCCGTCAGGTGTAGTCTCGTGGCAGAGCT
TCGACAACCCAACTGACGTTGTTCTTCCCGGTGCCAAGTTTGGCTGGAACAAGGCCACTG
GGTTGAATCGCCTTGGGATATCAAAGAAGAGCCTCATCGATCCAGGCCTTGGATCATACA
GTGTTGAACTAGACACGACTGGTGCCAGAGGGCTGATCCTCAAGCATCGCAACCCTTCCA
TGGAGTACTGGTCATCTGATAGAGCACTGATTATACCGGTACTTAAGTCTTTGTTTGAGA
TGGATCCACGGACCAGAGGCTTGATTACCCCGGCATACGTCGATAATAGTGAAGAGGAGT
ACTATATCTACACTATGTCGGATGAATCATCCTCTGTGTTTGTGTCGTTAGATGTTAATG
GGCAGATCAAGATGTATGTATGGTCACGAGCAAACCAGTCTTGGCAAAGCATATATGCAC
AGCCTGTTGATCCTTGCACCCCCTCTGCTACCTGTGGACCTTTCACCATCTGCAATGGTA
ATTCCACTCAAACATGTGACTGTATGGAGAGTTTTTCTGTGAAGTCACTGTGGGATTGGG
AGCTTGATGATAGAACAGGAGGGTGCATCAGAGATACCCCATTGCATTGTGTAAGTGACA
AAAACATGACAAGTTCAACTGACATGTTCCAACCTATAGGTCTTGTTACATTGCCCTATG
ACCCCCAAATTATGCAAGATGCTACAACTCAGGGTGAATGTGCACAAGCTTGTCTCAGTG
ATTGCTCTTGCACAGCTTATTCTTATCAAAATAGTAGATGCTCTGTCTGGCATGGGAAAT
TACTTAATGTAAATAAAAATGATGGCATTTACATTAATGCGGACAATGTTCTGCACCTTC
GTCTTGCTGCCACAGATTTCCAAGATTTGAGTAAAAACAAAAGAAAAACAAATGTTGAAC
TTGTTGTGGGCGCAAGCATTGTTAGTTTTGTGTTAGCATTGATCATGATACTGCTAATGA
TTAGAGGGAACAAATTCAAGTGTTGTGGTGCACCATTCCATGACAATGAAGGCCGTGGTG
GAATAATAGCCTTTCGATACACTGATTTAGCTCATGCTACTAAAAACTTCTCGGAAAAAT
TAGGAGCAGGTGGGTTTGGCTCAGTATTCAAAGGAGTGTTAACTAACATGGCTACCATAG
CAGTGAAAAAGCTTGATGGTGCCCATCAAGGTGAGAAGCAATTTAGAGCTGAGGTGAGCT
CCATTGGAATTATCCAACATATCAACTTAGTCAAATTGATCGGCTATTGTTGTGAGGGTG
ATAAGAGATTGCTGGTATATGAACACATGTTAAATGGTTCTCTTGATGTTCATCTATTTC
AGAGCCATGCAGCTGTCCTAAATTGGATTACCATGCACCAAATAGCCATAGGAGTTGCTA
GAGGATTGTCTTACTTGCATGAGAGTTGTCGTGAATGCATCATACATTGTGACATTAAAC
CAGAAAACATACTTCTCGATATATCATATTTTCCAAAACTTGCAGACTTTGGGATGGCAA
CATTTGTAGGAAGAGATTTTAGCCGAGTTCTAACTACTTTTAGAGGAACTGTAGGGTATC
TTGCACCAGAGTGGATTAGCGGAGTTGCTATTACTCCAAAAGTTGATGTTTACAGCTTTG
GTATGGTGCTATTTGAAATCATATCGGGAAGGAGGAATTCTCCTGAAGTACACACTAGTG
GTAATTATGATGCTACTTATTTCCCTGTGCGAGCGATTAATAAGCTGCATGAGGGAGACA
TGAGTAGTTTAGTGGACCCAAGATTACATGGTGACTACAATTTGGATGAGGTTGTCAGGG
TCTGCAAAGTTGCTTGTTGGTGTATCCAAGATGATGAGTTCGATCGGCCCACAATGCGTG
AAGTGGTCCGGGTTCTTGAGGGTCTACAAGAGCTTGATATGCCCCCAATGCCAAGGCTAC
TTGCGACTTTAACAAACTTCTCTGCTGTGGCTTCAATGTAATTGTGTTTTCTTCTACTTT
CTGCAAATTATAATTCTACATGGAAAACATTGATAAAGAAAACATGGTTATACTTGCTAA
ATTATATCTTTTTATTTAATTGATGGCTGCTTATGGTAAGCAAGTATTGTATC