Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0349500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:16645729:16648381:-1 gene:Os04g0349500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 40S ribosomal protein S8. (Os04t0349500-01)
Sequence

ATGGGTATCTCGCGTGACTCCATGCACAAGCGCCGGGCCACCGGTGGGAAGCAGAAAGCG
TGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGCCAGCCGGCAAACACCAAGTTGTCGAGC
AACAAGACAGTGAGGAGGGTCCGTGTTCGTGGAGGAAATCTGAAGTGGAGGGCTCTTCGC
CTGGATACTGGTAACTATTCTTGGGGAAGTGAGGCTGTCACTCGCAAGACCCGTATCCTT
GATGTGGTCTACAATGCGTCAAACAATGAGCTTGTGAGGACCCAGACCCTTGTGAAGAGT
GCCATTGTGCAAGTTGATGCTGCCCCATTCAAGCAGTGGTATCTCACTCACTATGGTGTC
GATATCGGTAGGAAGAAGAAAGCTCCTGCTGCTAAGAAGGATGCTGCTGAGGGACAAGAG
GGTGAGGCTGCCACGGAGGAAGCAAAAAAGAGCAACCATGTTGTGAGGAAGCTTGAAAAG
CGTCAGCAAACTCGCACTCTGGACTCGCACATTGAAGAGCAATTTGGCAGCGGAAGGCTC
TTGGCCTGCATCTCCTCCCGGCCTGGGCAATGTGGCAGAGCTGATGGGTACATCCTGGAG
GGCAAAGAGCTTGAGTTCTACATGAAGAAGCTCCAGAGGAAGAAGGGCAAGGGTGCTGCA
GCTTAG

Peptide Sequence

PEP ID

Os04t0349500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:16645729:16648381:-1 gene:Os04g0349500 transcript:Os04t0349500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 40S ribosomal protein S8. (Os04t0349500-01)
Sequence

MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR
LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV
DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL
LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAAA

Transcript Sequence

Transcript ID

Os04t0349500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:16645729:16648381:-1 gene:Os04g0349500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 40S ribosomal protein S8. (Os04t0349500-01)
Sequence

TCCTCCCCCCCGCTAGTTCCCAACCAGCAGCTGCGGCGGCGCGAGCACACGAAGAGGAGG
CGGAGCAGCCGGAGCCACCTCCGCCGCCGCCGCCACCATGGGTATCTCGCGTGACTCCAT
GCACAAGCGCCGGGCCACCGGTGGGAAGCAGAAAGCGTGGAGGAAGAAGCGAAAGTATGA
GCTTGGTCGCCAGCCGGCAAACACCAAGTTGTCGAGCAACAAGACAGTGAGGAGGGTCCG
TGTTCGTGGAGGAAATCTGAAGTGGAGGGCTCTTCGCCTGGATACTGGTAACTATTCTTG
GGGAAGTGAGGCTGTCACTCGCAAGACCCGTATCCTTGATGTGGTCTACAATGCGTCAAA
CAATGAGCTTGTGAGGACCCAGACCCTTGTGAAGAGTGCCATTGTGCAAGTTGATGCTGC
CCCATTCAAGCAGTGGTATCTCACTCACTATGGTGTCGATATCGGTAGGAAGAAGAAAGC
TCCTGCTGCTAAGAAGGATGCTGCTGAGGGACAAGAGGGTGAGGCTGCCACGGAGGAAGC
AAAAAAGAGCAACCATGTTGTGAGGAAGCTTGAAAAGCGTCAGCAAACTCGCACTCTGGA
CTCGCACATTGAAGAGCAATTTGGCAGCGGAAGGCTCTTGGCCTGCATCTCCTCCCGGCC
TGGGCAATGTGGCAGAGCTGATGGGTACATCCTGGAGGGCAAAGAGCTTGAGTTCTACAT
GAAGAAGCTCCAGAGGAAGAAGGGCAAGGGTGCTGCAGCTTAGAGCGTTCTCTCGAGTGT
GTTTTACGCTGGAAGGCCCGCCTATTTTATTCAGTGGATTTTGTTAGTCATGTTTGCGTC
TATGTCGTGCCTACAGACCCTACTGAACACCAATTTTCTGAAAGAATGATGAATCAACTC
TTAGCTTGGAAGAACTGATTGTGAGAATTTTCACATGCTATGGTTGTATTCTCGTGGTAT
TTAGGTTCCATGTGTACTCAGCTACAGCATTCTGTTATGTTTTATGCCCTTCCAAGGTTT
T