Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0346000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:16449496:16456317:1 gene:Os04g0346000 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0346000-01)
Sequence

ATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTGCTGCCGCTGCTCACCTTCGTCACGCTC
GGCATGATCCTAGGCTCTTTACTTCAGTTAGCGTTTTTCCGCCGGATAGATGATCACTCA
AATGTAACACATTTGGAGAATGATCAAGAAGCAGCTTTTCTCCGTCTAGGATTGGTGAAG
CCTGAAGTCATCAGCTGGTCACCTCGGATAATTGTCTTCCATAACTTTCTTAGTTCTGAG
GAGTGTGATTATCTAAGATCAATTGCTAGACCAAGACTACAGATTTCCACTGTAGTGGAT
GTCGCAACAGGAAAGGGTGTTAAAAGTAATGTCCGTACAAGTTCTGGTATGTTTGTGAGT
TCTGAAGAAAGAAAGTTACCAGTCATTCAGTCTATAGAGAAGAGGATTTCTGTGTACTCT
CAGATACCTGAAGAAAATGGAGAACTCATCCAAGTATTACGGTATGAACCAAGCCAATAT
TACAGGCCACATCATGATTACTTTTCTGACACTTTCAACATCAAACGTGGGGGCCAGCGA
GTTGCAACAATGTTGATGTATTTGACTGATGGTGTTGAAGGGGGTGAAACCCATTTTCCT
CAGGCAGGAGATGGTGAATGTAGCTGTGGCGGGAAGATGGTCAAAGGATTATGTGTCAAG
CCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGGGACTCGATGGTGAAACAGACTCA
AACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGG
ATGAGGCAAAAAGAATTTGTTTGA

Peptide Sequence

PEP ID

Os04t0346000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:16449496:16456317:1 gene:Os04g0346000 transcript:Os04t0346000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0346000-01)
Sequence

MGMARARARRLLPLLTFVTLGMILGSLLQLAFFRRIDDHSNVTHLENDQEAAFLRLGLVK
PEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVS
SEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQR
VATMLMYLTDGVEGGETHFPQAGDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLDGETDS
NSIHGGCPVLEGEKWSATKWMRQKEFV

Transcript Sequence

Transcript ID

Os04t0346000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:16449496:16456317:1 gene:Os04g0346000 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os04t0346000-01)
Sequence

AAAAAAAACATTAAAAAAAAGAGAAAAAAAAGGCCGAGGCGACCGGGCCGCGGCCCGACT
CCGGCGAGGTCGTCGACCAAGGCCGCCGAGATTCGTCGGGATTTCTCGCCAAAAATAGCA
AAGGCGGCGGCGGCGGCGGCGGCGGGGATGGGGATGGCGCGGGCGCGGGCGCGGCGGTTG
CTGCCGCTGCTCACCTTCGTCACGCTCGGCATGATCCTAGGCTCTTTACTTCAGTTAGCG
TTTTTCCGCCGGATAGATGATCACTCAAATGTAACACATTTGGAGAATGATCAAGAAGCA
GCTTTTCTCCGTCTAGGATTGGTGAAGCCTGAAGTCATCAGCTGGTCACCTCGGATAATT
GTCTTCCATAACTTTCTTAGTTCTGAGGAGTGTGATTATCTAAGATCAATTGCTAGACCA
AGACTACAGATTTCCACTGTAGTGGATGTCGCAACAGGAAAGGGTGTTAAAAGTAATGTC
CGTACAAGTTCTGGTATGTTTGTGAGTTCTGAAGAAAGAAAGTTACCAGTCATTCAGTCT
ATAGAGAAGAGGATTTCTGTGTACTCTCAGATACCTGAAGAAAATGGAGAACTCATCCAA
GTATTACGGTATGAACCAAGCCAATATTACAGGCCACATCATGATTACTTTTCTGACACT
TTCAACATCAAACGTGGGGGCCAGCGAGTTGCAACAATGTTGATGTATTTGACTGATGGT
GTTGAAGGGGGTGAAACCCATTTTCCTCAGGCAGGAGATGGTGAATGTAGCTGTGGCGGG
AAGATGGTCAAAGGATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGC
ATGGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAA
GGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAATTTGTTTGAGCGAAAGAT
GAGGCGAAGAATGATGCCTTCTAATTTCTGGCTATGCAGATATGGAGCTATATTCTTTCT
ATTATATGTAATGAAACGTTTCAGGAATCTTGCAAGCATATGAAAGTTCAAT