Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0338000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:15915699:15918901:1 gene:Os04g0338000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IN2-2 protein. (Os04t0338000-01)
Sequence

ATGGCAGCTGCTGCTCCGGCGACGGCGGCGGTGCGGCGCATGAAGCTGGGCTCGCAGGGT
CTGGAGGTCTCGGCGCAGGGGCTGGGATGCATGGGCATGTCCGCCTTCTACGGCCCGCCC
AAGCCGGAGCCCGACATGGTGGCGCTCATCCACCACGCCGTCGCCGCCGGCGTCACCCTC
CTCGACACCTCCGACATCTACGGCCCCCACACCAACGAGCTCCTCCTCGGCAAGGCGCTG
CAGGGCGGCGTGCGTGATAAGGTTGAGCTGGCCACCAAGTTCGGCATCGCGTTCGAAGAC
GGCAAGCGGGACGTCCGCGGGGACCCGGCGTACGTGCGCGCGGCGTGCGAGGGCAGCCTC
CGGCGGCTCGGCGTCGACAGCATCGACCTTTACTACCAGCACCGTGTCGACAAGAAGGTG
CCCATCGAGGTCACGATTGGCGAACTCAAGAAACTAGTTGAAGAAGGAAAGATAAAATAT
ATTGGGTTATCTGAAGCATCTGCATCAACTATCAGAAGGGCTCATGCTGTACACCCTATC
ACTGCTGTTCAGCTTGAGTGGTCATTATGGTCTAGAGACGTGGAAGAAGATATAATTCCA
ACTTGCAGAGAACTTGGAATTGGAATAGTAGCTTATAGCCCACTTGGTAGAGGGTTCTTT
TCTGCTGGAGCTAAACTAGTGGAGTCTCTATCAGATCAGGATTTTCGCAAGCATATTCCT
AGATTTCAACAAGAGAATCTTGAGAAGAATGCTGAAATATTTGAGCGTGTTAACGCAATG
GCAGCCAGAAAAGGATGCACACCGTCACAGCTCGCATTGGCCTGGGTCCATCATCAGGGA
AGCGATGTATGCCCCATACCTGGGACAACAAAAATCGAGAATTTAAACCAAAACATTGGA
GCACTATCTGTGAAGCTCACACCTGAGGAAATGGCTGAACTCGAGTCTTACGCAAGCACA
GATGATGTTCGAGGCGACCGGTATCCTCAGGCGATGGCCAACACTACTTGGCAAAATTCT
GAGACCCCTCCCTTGTCATCTTGGAAAGCTCAGTAA

Peptide Sequence

PEP ID

Os04t0338000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:15915699:15918901:1 gene:Os04g0338000 transcript:Os04t0338000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IN2-2 protein. (Os04t0338000-01)
Sequence

MAAAAPATAAVRRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPEPDMVALIHHAVAAGVTL
LDTSDIYGPHTNELLLGKALQGGVRDKVELATKFGIAFEDGKRDVRGDPAYVRAACEGSL
RRLGVDSIDLYYQHRVDKKVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPI
TAVQLEWSLWSRDVEEDIIPTCRELGIGIVAYSPLGRGFFSAGAKLVESLSDQDFRKHIP
RFQQENLEKNAEIFERVNAMAARKGCTPSQLALAWVHHQGSDVCPIPGTTKIENLNQNIG
ALSVKLTPEEMAELESYASTDDVRGDRYPQAMANTTWQNSETPPLSSWKAQ

Transcript Sequence

Transcript ID

Os04t0338000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:15915699:15918901:1 gene:Os04g0338000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to IN2-2 protein. (Os04t0338000-01)
Sequence

GGAGAGAAATCGATCGATCCGATTCCGGCCGGCCATGGCAGCTGCTGCTCCGGCGACGGC
GGCGGTGCGGCGCATGAAGCTGGGCTCGCAGGGTCTGGAGGTCTCGGCGCAGGGGCTGGG
ATGCATGGGCATGTCCGCCTTCTACGGCCCGCCCAAGCCGGAGCCCGACATGGTGGCGCT
CATCCACCACGCCGTCGCCGCCGGCGTCACCCTCCTCGACACCTCCGACATCTACGGCCC
CCACACCAACGAGCTCCTCCTCGGCAAGGCGCTGCAGGGCGGCGTGCGTGATAAGGTTGA
GCTGGCCACCAAGTTCGGCATCGCGTTCGAAGACGGCAAGCGGGACGTCCGCGGGGACCC
GGCGTACGTGCGCGCGGCGTGCGAGGGCAGCCTCCGGCGGCTCGGCGTCGACAGCATCGA
CCTTTACTACCAGCACCGTGTCGACAAGAAGGTGCCCATCGAGGTCACGATTGGCGAACT
CAAGAAACTAGTTGAAGAAGGAAAGATAAAATATATTGGGTTATCTGAAGCATCTGCATC
AACTATCAGAAGGGCTCATGCTGTACACCCTATCACTGCTGTTCAGCTTGAGTGGTCATT
ATGGTCTAGAGACGTGGAAGAAGATATAATTCCAACTTGCAGAGAACTTGGAATTGGAAT
AGTAGCTTATAGCCCACTTGGTAGAGGGTTCTTTTCTGCTGGAGCTAAACTAGTGGAGTC
TCTATCAGATCAGGATTTTCGCAAGCATATTCCTAGATTTCAACAAGAGAATCTTGAGAA
GAATGCTGAAATATTTGAGCGTGTTAACGCAATGGCAGCCAGAAAAGGATGCACACCGTC
ACAGCTCGCATTGGCCTGGGTCCATCATCAGGGAAGCGATGTATGCCCCATACCTGGGAC
AACAAAAATCGAGAATTTAAACCAAAACATTGGAGCACTATCTGTGAAGCTCACACCTGA
GGAAATGGCTGAACTCGAGTCTTACGCAAGCACAGATGATGTTCGAGGCGACCGGTATCC
TCAGGCGATGGCCAACACTACTTGGCAAAATTCTGAGACCCCTCCCTTGTCATCTTGGAA
AGCTCAGTAATTGTTTTCATCTGTTCAAATACAAAGTCCTGGTCCAAAATAGCTGAATGG
CAGAGCGCACACAAGATTTTGTAGAACGTATTCATCAGTCGCTGGACGCTGCTTGCTCCT
GTTATACATCACGTATATTTGGAATGAGATGTCCTGTCTGTCTGTATTGTGTTATGTTCT
ATGCTTTCGTCATGTTTGTGCCTACAACCTACTTGTGTGAAGTGCGGTTCTATAAGCCTG
TGCACTGCACGCAGTACGTGTGCTAATAATAAAATAATGTTTTGCAATCAC