Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0309600-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:14008245:14013443:1 gene:Os04g0309600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SUCROSE SYNTHASE 5 description:Similar to Sucrose synthase. (Os04t0309600-01)
Sequence

ATGGCATCCAAGCTGAGTTTCAAGCGAATGGACAGCATTGCCGAGACAATGCCAGATGCC
CTACGACAAAGCCGGTACCAGATGAAGAGATGCTTCCAAAGGTACGTATCAAAGGGTAAG
AGGCTCTTGAAGAACCAGCAGCTCATGGAAGAGCTGGAAAAGTCACTAGATGACAAAGTT
GAGAAGGAGAAGCTTGTCGAAGGCTTTCTCGGTTACATCATTTGTTCGACACAGGAAGCA
GTAGTACTCCCACCGTTTGTGGCATTCGCTGTCAGAATGAATCCTGGTATCTGGGAGTAC
GTCAAAGTTCACTCTGATGATCTTTCTGTCGAAGGAATCACACCGTCGGAGTATCTCAAG
TTCAAGGAGACCTTATACGATGAAAAATGGGCCAAGGATGACAACTCACTGGAAGTTGAT
TTCGGTGCCCTTGACCTCTCAACACCCCATTTGACACTGCCCTCGTCAATAGGGAATGGG
CTTCAGTTTGTCTCCAAATTCATGTCCTCAAAGCTGGGTGGCAAACCTGAAAGCATGAAG
CCTCTGTTGGACTATTTACTTACCTTGAATTACCGTGGCGAGAAGTTGATGATTAATGAC
ACCATCGACACTGTGAGCAAGCTTCAGACAGCACTGCTACTTGCAGAGGTTTTCGTTAGT
GGGCTGCCAAAATACACGCCTTACTTGAAGTTTGAACAAAGATTTCAGGAGTGGGGGTTA
GAGAGGGGATGGGGTGACACTGCGGAGAGGTGCAAAGAAACACTAAATTGTCTGTCTGAA
GTGCTACAGGCACCAGATCCTACAAACATGGAGAAGTTCTTCAGCAGGGTTCCATCCATA
TTCAACATTGTCATCTTCTCTATTCATGGTTACTTCGGCCAAGAAAAGGTTCTTGGATTG
CCGGATACCGGTGGTCAGGTTGTCTACATATTGGATCAAGTCAGAGCCATGGAAGAGGAG
CTGCTTCAAAGAATCAAGCAGCAGGGTCTGCACGTAACACCGAAAATTCTTGTGCTTACA
AGACTGATACCAGATGCCAAAGGCACAAAATGCAATGTGGAGCTTGAACCAGTTGAAAAT
ACAAAATACTCACATATACTACGTGTGCCATTCAAGACTGAAGATGGCAAGGATTTGCGC
CAGTGGGTGTCCCGGTTTGACATCTATCCTTATCTAGAGAGATATGCGCAGGACTCTTGT
GCCAAAATTCTCGACATTTTGGAGGGCAAACCGGACTTGATAATTGGCAACTACACCGAT
GGCAACTTGGTGGCATCCCTCTTGTCTAACAAACTATGTGTCACTCAGGGAACAATTGCA
CACGCTCTGGAGAAGACAAAGTACGAGGATTCAGATGTTAAGTGGAGAGAGATGGACCAG
AAGTACCATTTCTCTTGCCAATTTACCGCCGATATGATTTCCATGAACACCAGCGACTTC
ATCATCACTAGCACTTACCAAGAAATTGCTGGGAGCAAAGAGAAGCCTGGCCAATATGAG
CACCACTACGCATTCACAATGCCGGGACTATGCCGCTACGCCACAGGCATTAATGTATTC
GACCCAAAGTTCAACATTGCTGCACCTGGTGCAGACCAGTCCATCTACTTCCCCTTCACG
CAGAAGCAGAAGCGGCTGACAGATTTACACCCACAGATAGACGAACTGCTGTACAGCAAG
GATGACACTGATGAACACATAGGGTATCTGGCAGACAGGAACAAACCAATCATCTTCTCG
ATGGCAAGGCTTGATAAGGTAAAAAACAAGAAGCTGAGGGACCTCGTCAATCTCGTCGTC
GTCGCGGGGCTCCTGGATGCTTCGCAGTCCAAGGATCGAGAGGAGATCGAGGAGATAAAC
AAGATGCACAACCTGATGGACAGGTACCAGCTCAAAGGACAGATCCGCTGGATCAAGGCA
CAGACTGACCGTGTCCGCAACGGTGAGCTGTACCGTTGCATTGCAGATACAAAGGGTGCA
TTTGTTCAGCCTGCACTGTATGAAGCATTCGGGCTAACGGTCATCGAGGCGATGAACTGC
GGGTTGCCAACCTTCGCAACGAACCAGGGCGGACCAGCTGAGATAATCATCGACGGTGTC
TCTGGTTTCCACGTAAACCCCATCAACGACAGGGAGGCAGGAATCAAGATTGCAGATTTC
TTCCAGAAATGCAAGGAAGACCCAAGTTACTGGAACAAGGTGTCCACTGCTGGGCTTCAG
CGGATCTGCGAGTGCTACACATGGAAGATTTATGCAACTAGAGTGCTAAACATGGGATCT
ACATATTCCTTCTGGAAGACACTAAACAAGGAGGAAAGACAAGCCAAACAACGTTACCTG
CAGATATTCTACAATGTTCAGTATAGGAACCTGGCAAAGGCTATGGCAAGAGCAGGGGAT
CAACAGGCTCGGCAAACCACAACAGGCGTGGCGCCTAGTGAGATCGTAGTTAGACCCAAA
GAAAGAAAGCCGCAGACTCGGATGCAAAGGATCTTAACCAGGTTAGCCGGGCAGAAGCCT
CCAGTTTCTGAGTAG

Peptide Sequence

PEP ID

Os04t0309600-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:14008245:14013443:1 gene:Os04g0309600 transcript:Os04t0309600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SUCROSE SYNTHASE 5 description:Similar to Sucrose synthase. (Os04t0309600-01)
Sequence

MASKLSFKRMDSIAETMPDALRQSRYQMKRCFQRYVSKGKRLLKNQQLMEELEKSLDDKV
EKEKLVEGFLGYIICSTQEAVVLPPFVAFAVRMNPGIWEYVKVHSDDLSVEGITPSEYLK
FKETLYDEKWAKDDNSLEVDFGALDLSTPHLTLPSSIGNGLQFVSKFMSSKLGGKPESMK
PLLDYLLTLNYRGEKLMINDTIDTVSKLQTALLLAEVFVSGLPKYTPYLKFEQRFQEWGL
ERGWGDTAERCKETLNCLSEVLQAPDPTNMEKFFSRVPSIFNIVIFSIHGYFGQEKVLGL
PDTGGQVVYILDQVRAMEEELLQRIKQQGLHVTPKILVLTRLIPDAKGTKCNVELEPVEN
TKYSHILRVPFKTEDGKDLRQWVSRFDIYPYLERYAQDSCAKILDILEGKPDLIIGNYTD
GNLVASLLSNKLCVTQGTIAHALEKTKYEDSDVKWREMDQKYHFSCQFTADMISMNTSDF
IITSTYQEIAGSKEKPGQYEHHYAFTMPGLCRYATGINVFDPKFNIAAPGADQSIYFPFT
QKQKRLTDLHPQIDELLYSKDDTDEHIGYLADRNKPIIFSMARLDKVKNKKLRDLVNLVV
VAGLLDASQSKDREEIEEINKMHNLMDRYQLKGQIRWIKAQTDRVRNGELYRCIADTKGA
FVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIIDGVSGFHVNPINDREAGIKIADF
FQKCKEDPSYWNKVSTAGLQRICECYTWKIYATRVLNMGSTYSFWKTLNKEERQAKQRYL
QIFYNVQYRNLAKAMARAGDQQARQTTTGVAPSEIVVRPKERKPQTRMQRILTRLAGQKP
PVSE

Transcript Sequence

Transcript ID

Os04t0309600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:14008245:14013443:1 gene:Os04g0309600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SUCROSE SYNTHASE 5 description:Similar to Sucrose synthase. (Os04t0309600-01)
Sequence

CTTTCCTAATTTTCTTTCCCTGCTTTGTTCTTGTGCCTTCTCCATCTACTTCCAAGTCTG
GTGGTCTCTTTTGCCATGGCATCCAAGCTGAGTTTCAAGCGAATGGACAGCATTGCCGAG
ACAATGCCAGATGCCCTACGACAAAGCCGGTACCAGATGAAGAGATGCTTCCAAAGGTAC
GTATCAAAGGGTAAGAGGCTCTTGAAGAACCAGCAGCTCATGGAAGAGCTGGAAAAGTCA
CTAGATGACAAAGTTGAGAAGGAGAAGCTTGTCGAAGGCTTTCTCGGTTACATCATTTGT
TCGACACAGGAAGCAGTAGTACTCCCACCGTTTGTGGCATTCGCTGTCAGAATGAATCCT
GGTATCTGGGAGTACGTCAAAGTTCACTCTGATGATCTTTCTGTCGAAGGAATCACACCG
TCGGAGTATCTCAAGTTCAAGGAGACCTTATACGATGAAAAATGGGCCAAGGATGACAAC
TCACTGGAAGTTGATTTCGGTGCCCTTGACCTCTCAACACCCCATTTGACACTGCCCTCG
TCAATAGGGAATGGGCTTCAGTTTGTCTCCAAATTCATGTCCTCAAAGCTGGGTGGCAAA
CCTGAAAGCATGAAGCCTCTGTTGGACTATTTACTTACCTTGAATTACCGTGGCGAGAAG
TTGATGATTAATGACACCATCGACACTGTGAGCAAGCTTCAGACAGCACTGCTACTTGCA
GAGGTTTTCGTTAGTGGGCTGCCAAAATACACGCCTTACTTGAAGTTTGAACAAAGATTT
CAGGAGTGGGGGTTAGAGAGGGGATGGGGTGACACTGCGGAGAGGTGCAAAGAAACACTA
AATTGTCTGTCTGAAGTGCTACAGGCACCAGATCCTACAAACATGGAGAAGTTCTTCAGC
AGGGTTCCATCCATATTCAACATTGTCATCTTCTCTATTCATGGTTACTTCGGCCAAGAA
AAGGTTCTTGGATTGCCGGATACCGGTGGTCAGGTTGTCTACATATTGGATCAAGTCAGA
GCCATGGAAGAGGAGCTGCTTCAAAGAATCAAGCAGCAGGGTCTGCACGTAACACCGAAA
ATTCTTGTGCTTACAAGACTGATACCAGATGCCAAAGGCACAAAATGCAATGTGGAGCTT
GAACCAGTTGAAAATACAAAATACTCACATATACTACGTGTGCCATTCAAGACTGAAGAT
GGCAAGGATTTGCGCCAGTGGGTGTCCCGGTTTGACATCTATCCTTATCTAGAGAGATAT
GCGCAGGACTCTTGTGCCAAAATTCTCGACATTTTGGAGGGCAAACCGGACTTGATAATT
GGCAACTACACCGATGGCAACTTGGTGGCATCCCTCTTGTCTAACAAACTATGTGTCACT
CAGGGAACAATTGCACACGCTCTGGAGAAGACAAAGTACGAGGATTCAGATGTTAAGTGG
AGAGAGATGGACCAGAAGTACCATTTCTCTTGCCAATTTACCGCCGATATGATTTCCATG
AACACCAGCGACTTCATCATCACTAGCACTTACCAAGAAATTGCTGGGAGCAAAGAGAAG
CCTGGCCAATATGAGCACCACTACGCATTCACAATGCCGGGACTATGCCGCTACGCCACA
GGCATTAATGTATTCGACCCAAAGTTCAACATTGCTGCACCTGGTGCAGACCAGTCCATC
TACTTCCCCTTCACGCAGAAGCAGAAGCGGCTGACAGATTTACACCCACAGATAGACGAA
CTGCTGTACAGCAAGGATGACACTGATGAACACATAGGGTATCTGGCAGACAGGAACAAA
CCAATCATCTTCTCGATGGCAAGGCTTGATAAGGTAAAAAACAAGAAGCTGAGGGACCTC
GTCAATCTCGTCGTCGTCGCGGGGCTCCTGGATGCTTCGCAGTCCAAGGATCGAGAGGAG
ATCGAGGAGATAAACAAGATGCACAACCTGATGGACAGGTACCAGCTCAAAGGACAGATC
CGCTGGATCAAGGCACAGACTGACCGTGTCCGCAACGGTGAGCTGTACCGTTGCATTGCA
GATACAAAGGGTGCATTTGTTCAGCCTGCACTGTATGAAGCATTCGGGCTAACGGTCATC
GAGGCGATGAACTGCGGGTTGCCAACCTTCGCAACGAACCAGGGCGGACCAGCTGAGATA
ATCATCGACGGTGTCTCTGGTTTCCACGTAAACCCCATCAACGACAGGGAGGCAGGAATC
AAGATTGCAGATTTCTTCCAGAAATGCAAGGAAGACCCAAGTTACTGGAACAAGGTGTCC
ACTGCTGGGCTTCAGCGGATCTGCGAGTGCTACACATGGAAGATTTATGCAACTAGAGTG
CTAAACATGGGATCTACATATTCCTTCTGGAAGACACTAAACAAGGAGGAAAGACAAGCC
AAACAACGTTACCTGCAGATATTCTACAATGTTCAGTATAGGAACCTGGCAAAGGCTATG
GCAAGAGCAGGGGATCAACAGGCTCGGCAAACCACAACAGGCGTGGCGCCTAGTGAGATC
GTAGTTAGACCCAAAGAAAGAAAGCCGCAGACTCGGATGCAAAGGATCTTAACCAGGTTA
GCCGGGCAGAAGCCTCCAGTTTCTGAGTAGAGAGCATCTTCCGACCAAGACAACACCGAA
ACCAGCCCACATCGCAGCTCAATTTATTCCATTGATACCGATGTATGAAATACTAACTAC
TACTTGCGTGAGATTTGTGTACAATGTGTAATCATATATATGGTGTGTTTATTATTGATT
GGCAATATGTACATACGATTGTTTATTGATTTACAATGCAACATCCTTTCAAGC