Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0304200-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:13641661:13654849:-1 gene:Os04g0304200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin). (Os04t0304200-01)
Sequence	GTACTCTGCCGCTTCCTCCAGGGCCCCGACACCGACGCCGCCGAGGTGGCCAAGATCCGC GACGCCGTCAAGCACGGCCGCAGCTTCTGCGGCCGCCTGCTCAACTACCGCAAGGACGGC GCCCCGTTCTGGAACCTCCTCACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATC AAGTTCATCGGGATGCAGGTGGAGGTGAGCAAGTACACGGAGGGGCTCAGCGACAAGCGG ATGCGGCCGAACGAGTTGCCGGTGTCGCTCATCCGCTACGACGAGAGGCAGAAGGACAAG GCGATGTCGTCGATGACGGAGGTGGTGCAGACGGTGAAGCAGCCGCGCGGGGCGCGCGCG CCGGCCGACGCGGCGCTGCTGACGCCGCCCAAGATGAGCGACGCGGACAAGATGGCCGCC ATGTCGCCGGTCGTGGCACCCGGCACTCCCTCGGGCGGAGGAGGAGGAGCCGGGTCCTTC AAGTCGCCGCTCTGGGACCTGAAGAAGGAGGAGTCCCGCCTGAGCCGGCTCGCCAGCGGC CGCAAGTCCGGCCGCTCCTCCCTCATGGGGTTCAAGATCGGGAAGAGGAGCTCGGTGGGG AGCAGGGAGGCGCCGGCGGTGGTGGAGGAGCCGGCGCCGGCGCCACCGCCGGCGCCGGAG GTGGTGGAGAGGACGGACAGCTGGGAGCGGGCGGAGCGGGAGAAGGACATCCGGCAGGGG ATCGACCTGGCCACCACGCTGGAGCGCATCGAGAAGAACTTCGTCATCACCGACCCCAGG ATCCCGGACAACCCCATCATCTTCGCGTCGGATAGCTTCCTGGAGCTGACGGAGTACACG CGGGAAGAGATCCTGGGAAGGAATTGCAGATTCCTTCAAGGGCCGGAGACCGACCAGGGC ACGGTGGACAAGATCAGGGAGGCCATCAGGGAGCAGAAGGAGATCACGGTCCAGCTAATC AACTACACCAAGAGCGGGAAGAAGTTCTGGAACTTGTTCCACCTTCAACCCATGCGCGAC CAGAAGGGGGAGCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAA CCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCAAATTGGTCAAAGCT ACAGCAGAGAATGTGGATGATGCAGTCAGGGAGCTTCCTGATGCCAACTTGAGACCAGAG GATTTGTGGGCAATTCACTCAATGCGTGTTTCTCCAAAACCTCACAAACGGAATAACCCT TCTTGGATAGCTATAGAAAAGGCTACAAATTTAGGGGAGAAGATTGGCTTGAAACACTTC AAGCCTGTAAAACCTCTCGGCTGTGGTGACACTGGCAGTGTGCACTTGGTTGAGCTACAA GGAAGTGGTGAATTATTTGCAATGAAGGCCATGGACAAGTCAGTGATGTTGAACCGCAAC AAGGTACATCGAGCTTGTATTGAAAGAGAAATATACGCACTATTGGATCATCCATTTCTC CCAACATTGTATACTTCATTTCAGACGCCAACACATGTTTGTCTCATAACAGACTTTTGT CCGGGAGGAGAACTCTTTGCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAA TGTGCAAGGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAGGT ATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGGGCACATTGTA CTGACTGATTTTGATCTTTCATTTTTGACGACTTCAAAACCCCACGTGATAAAAAATTCC ACATCATTAAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAACCT TCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAGAGGTTATAACG GGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCGGAATTCTATTGTATGAGATG CTGTATGGGCGTACACCTTTCCGAGGAAAGAACAGGAAAAAGACATTTTATAACATACTG CACAAAGACCTTACATTTCCCAGTAGCATTCCGGTTAGTCTTGCAGCAAAGCAATTAATC CATGGATTACTTCAGAGAGATCCTTCAAATCGTATAGGTTCAAATGCTGGTGCAAATGAC ATCAAGCAACATTCCTTTTTTCAAGACATCAATTGGCCACTCATACGTTGCATGAGCCCC CCTGAACTAGATGTTCCTCTGAAACTAATTGGCAAGGAAACTCAACCAAAAGCGAAGCCT GATGAAGATGTTCCCCTAAATCTTGATACATTTTAA

Peptide Sequence

PEP ID	Os04t0304200-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:13641661:13654849:-1 gene:Os04g0304200 transcript:Os04t0304200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin). (Os04t0304200-01)
Sequence	VLCRFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVI KFIGMQVEVSKYTEGLSDKRMRPNELPVSLIRYDERQKDKAMSSMTEVVQTVKQPRGARA PADAALLTPPKMSDADKMAAMSPVVAPGTPSGGGGGAGSFKSPLWDLKKEESRLSRLASG RKSGRSSLMGFKIGKRSSVGSREAPAVVEEPAPAPPPAPEVVERTDSWERAEREKDIRQG IDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQG TVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVE PLRNRLSENTEIQSAKLVKATAENVDDAVRELPDANLRPEDLWAIHSMRVSPKPHKRNNP SWIAIEKATNLGEKIGLKHFKPVKPLGCGDTGSVHLVELQGSGELFAMKAMDKSVMLNRN KVHRACIEREIYALLDHPFLPTLYTSFQTPTHVCLITDFCPGGELFAVLDRQPMKIFREE CARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQADGHIVLTDFDLSFLTTSKPHVIKNS TSLKRRRSQEFLPPTFVSEPSTPSNSFVGTEEYIAPEVITGAGHTSAIDWWALGILLYEM LYGRTPFRGKNRKKTFYNILHKDLTFPSSIPVSLAAKQLIHGLLQRDPSNRIGSNAGAND IKQHSFFQDINWPLIRCMSPPELDVPLKLIGKETQPKAKPDEDVPLNLDTF

Transcript Sequence

Transcript ID	Os04t0304200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:13641661:13654849:-1 gene:Os04g0304200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin). (Os04t0304200-01)
Sequence	GGGGGGCGAGGTGGCCGCGCCGCGGCCACAGAATCCCGGCGAGACGACCGTGAGTCGCTC GATCGCTCACGGGCTCGCGGATTGCATTATCCTCACCTGCCGCCGCTGCTGCTACGCCCG CCATTCTTTCTGTCGCCTACTTGCTTCCTCCTCTTCCTCTTCCTCTTCCCTCGTCTCCCC GGCGCCACCTGACTGATTGGATTGGTATCGATCCAAGCCTATCAGCCTAGCTAGTGACCT GAGTACTCTGCCGCTTCCTCCAGGGCCCCGACACCGACGCCGCCGAGGTGGCCAAGATCC GCGACGCCGTCAAGCACGGCCGCAGCTTCTGCGGCCGCCTGCTCAACTACCGCAAGGACG GCGCCCCGTTCTGGAACCTCCTCACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCA TCAAGTTCATCGGGATGCAGGTGGAGGTGAGCAAGTACACGGAGGGGCTCAGCGACAAGC GGATGCGGCCGAACGAGTTGCCGGTGTCGCTCATCCGCTACGACGAGAGGCAGAAGGACA AGGCGATGTCGTCGATGACGGAGGTGGTGCAGACGGTGAAGCAGCCGCGCGGGGCGCGCG CGCCGGCCGACGCGGCGCTGCTGACGCCGCCCAAGATGAGCGACGCGGACAAGATGGCCG CCATGTCGCCGGTCGTGGCACCCGGCACTCCCTCGGGCGGAGGAGGAGGAGCCGGGTCCT TCAAGTCGCCGCTCTGGGACCTGAAGAAGGAGGAGTCCCGCCTGAGCCGGCTCGCCAGCG GCCGCAAGTCCGGCCGCTCCTCCCTCATGGGGTTCAAGATCGGGAAGAGGAGCTCGGTGG GGAGCAGGGAGGCGCCGGCGGTGGTGGAGGAGCCGGCGCCGGCGCCACCGCCGGCGCCGG AGGTGGTGGAGAGGACGGACAGCTGGGAGCGGGCGGAGCGGGAGAAGGACATCCGGCAGG GGATCGACCTGGCCACCACGCTGGAGCGCATCGAGAAGAACTTCGTCATCACCGACCCCA GGATCCCGGACAACCCCATCATCTTCGCGTCGGATAGCTTCCTGGAGCTGACGGAGTACA CGCGGGAAGAGATCCTGGGAAGGAATTGCAGATTCCTTCAAGGGCCGGAGACCGACCAGG GCACGGTGGACAAGATCAGGGAGGCCATCAGGGAGCAGAAGGAGATCACGGTCCAGCTAA TCAACTACACCAAGAGCGGGAAGAAGTTCTGGAACTTGTTCCACCTTCAACCCATGCGCG ACCAGAAGGGGGAGCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTG AACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCAAATTGGTCAAAG CTACAGCAGAGAATGTGGATGATGCAGTCAGGGAGCTTCCTGATGCCAACTTGAGACCAG AGGATTTGTGGGCAATTCACTCAATGCGTGTTTCTCCAAAACCTCACAAACGGAATAACC CTTCTTGGATAGCTATAGAAAAGGCTACAAATTTAGGGGAGAAGATTGGCTTGAAACACT TCAAGCCTGTAAAACCTCTCGGCTGTGGTGACACTGGCAGTGTGCACTTGGTTGAGCTAC AAGGAAGTGGTGAATTATTTGCAATGAAGGCCATGGACAAGTCAGTGATGTTGAACCGCA ACAAGGTACATCGAGCTTGTATTGAAAGAGAAATATACGCACTATTGGATCATCCATTTC TCCCAACATTGTATACTTCATTTCAGACGCCAACACATGTTTGTCTCATAACAGACTTTT GTCCGGGAGGAGAACTCTTTGCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAG AATGTGCAAGGTTTTATGCTGCAGAGGTTGTAATTGGTCTCGAGTACCTTCATTGCCTAG GTATTATATACCGTGATCTGAAGCCAGAAAACATTTTGCTCCAAGCAGATGGGCACATTG TACTGACTGATTTTGATCTTTCATTTTTGACGACTTCAAAACCCCACGTGATAAAAAATT CCACATCATTAAAACGAAGAAGGTCACAAGAATTTCTCCCCCCAACATTTGTCTCAGAAC CTTCCACTCCATCAAATTCATTTGTTGGTACTGAAGAGTATATCGCTCCAGAGGTTATAA CGGGTGCAGGGCATACAAGTGCAATCGATTGGTGGGCTCTCGGAATTCTATTGTATGAGA TGCTGTATGGGCGTACACCTTTCCGAGGAAAGAACAGGAAAAAGACATTTTATAACATAC TGCACAAAGACCTTACATTTCCCAGTAGCATTCCGGTTAGTCTTGCAGCAAAGCAATTAA TCCATGGATTACTTCAGAGAGATCCTTCAAATCGTATAGGTTCAAATGCTGGTGCAAATG ACATCAAGCAACATTCCTTTTTTCAAGACATCAATTGGCCACTCATACGTTGCATGAGCC CCCCTGAACTAGATGTTCCTCTGAAACTAATTGGCAAGGAAACTCAACCAAAAGCGAAGC CTGATGAAGATGTTCCCCTAAATCTTGATACATTTTAAGGGTAGATCAAACTGGAGCAGT TCTTTTTCCTGTATAGTAATAAGAGGCTTCATGTGATGTTAGCATTGTTGAGTGTTTTCA GTCTGAGCTGCCTCAAAATCGTGTACATGATTATTCTTTTGGTTAGGTAAAGATCTTAGT ACTTCACATAAATAGGATATATTCTTGTAAAGCTTATACTCTTTTCTTGGAGATGATTCA ATAAAGTAGTAGTGTTTATAATATATTTT