Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0298700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:13220130:13225103:-1 gene:Os04g0298700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clp, N-terminal domain containing protein. (Os04t0298700-01)
Sequence	ATGCGGGCGGGGGCGTACACCATCCACCAGTCGCTCACCGCCGAGGCGGCCGCGGTGCTC AAGCTCGCGCTCGGCATCGCGCGACGCCGCGGTCATGCGCAGGTCACGCCGCTCCACGTC GCGTTCGCGCTGCTGAGCCCGGCGTGCTCGCCGCCGCAGCAGCAGCCGGCGCCGCCGCCG TACGGTCTGCTCAAGCGCGCGTGCCTGCGGTCGCACCCGTCCGCCGCGGCGGCGGTGGCC GCGCACCCGCTCCAGTGCCGTGCGCTCGAGCTCTGCTTCAACGTCGCGCTCAACCGCCTG CCCACCTCCGCGCCGCACTCGCCGCCCCCGTCGTCGTCCGCGCCGTCGGGCGCCGTGGCG CCGCCGTTCGCGTCGTCGCTCATCCAGCCTAACCCGACGCTCTCCAACGCGCTCGTCGCC GCGCTCAAGCGCGCGCAGGCCAACCAGCGCCGCGGCTGCGTCGAGCTCCAGCAGCAGCCT CCTCCTCCGCCACCGCCGCCGCCGCCGCCGGTGGCTGCCACGGCGCAGCAGCAGCAGCCG TTGCTCGCCATCAAGGTCGAGCTGGACCAGCTCATCATCTCCATCCTCGACGATCCCAGC GTGAGCCGGGTGATGCGCGAGGCCGGCTTCTCCAGCTCCACCGTCAAGAGCAACCTCGAG GGGGAGAGCGCGCTCATGATGTCCACCTCATCGTCCCCTCCGCCGCCGGCCATCCCACCT CACTTCTTCCTCGACCCCAGCATTGGCGTCGGCGGCAACGGTGGCGGCGGCGGCGGCGGC TTCATGCTGTGGCCGGCGCCGTTCTTGAGCTCGCCGGGCATGGCGGTGCCGTCGTGCAAG GAGGACGTGAGGGCGGTATTGGAGGTGATGGTGCGGAAGCAGGGGAGGCGGACCAACCCC GTGGTGGTCGGCGACTCGGTGTCAATGGCGGAAGCCGTCGCCGGCGAGCTCCTGCGGCGG CTGGAGGGCGGCGACGTCCCGGACGAGCTCGCCGGCGCGCACCTCCTCAAGCTCCAGCTC TCCTACGTCCACGTCCGCCTCATGAGCCGCGCCGACGTGGACGCCAAGGCCGCCGAGCTC CGCCGCAGCGTCGACGCCGTCAAGCGCGGCGGCCTGGTCGTCTACGTCGGCGACCTCCGC TGGGCGCTCGACGAGGACCACCACCACCACCACCACCCCGGCGCGGACCACCACAACACC GCCTCGTCCTACAGCCCCGTCGAACACATGGTCGCCGAGCTCGGCCGCCTCCTCGGCGAC CTCCGAGCCAGCGCGCCGCCGCGCGGGCGCGTCTGGCTCGTCGCCACGGCGAGCTACCAG ACATACATGCGATGCCGCCGCCGCCGCCCGTCGCTGGAGTCCGCGTGGGCGCTCCAGGCC GTCGTCGTCCCCACCGGCGCCGGCACCGGCCTGGCCCTCAACAACCTCCACGCCGTCGCC ACCACCACGAGCAATGGAGAGCCTGTGCAGCAGGCCATGGTGGCGACCAACCACCAGCAG CAGCAGCAGCAGCTTGCTAGCCCTTTCGTCGCCATGGCCGCCGAGCCGGCAGCGAGGAAC GAGCTGGATGACAAGCTGCTGGTACTCTGCACCGAGTGCAGCCACAACTACGAGAGGGAG GCGTCGGCGGTGAAGGCGGAGGCGGCCGCCGACGAGGAGGGCCCACGCGCCGCCGGTAAT CTCCCCGGCTGGCTCGTGCCGGAGCCACCCAAGGAGAACTATTTGATCGAGCTGAAGAGG AAATGGAGTAGGCTATGCAGAAAGCTTCATCTCTGCGGCGGCGGCGATCCATGCTCAGGT CAGTCGTTTGGAGCTGGAGCTTATGGCAATGGACCAAGCAGCCTCCTCCCATGGTGGTCA GCTTCTTGCTTGCTGCCGAACGGCGGCGGCAAGCCGAGCATTGCGGGGTTCTTGGGCATG GAGGCGTTGCGGTGGTCGCCGCCGGCGGCGGCGGCGCTGCCGTCCCTGAGTTCTCTGAGG GAGCCGGAGTGCCAGGACGTGACGACGGCGCTCGCGCTCGGCAGCCTCCCGCTCTCGGAC TCGGCGTCGTCCTCCGGTGGCGGCGGTGGCGACGGCGCGGCGGCGCGCGAGCTGGAGCGG AGGCTGCGCAAGAACGTGCCGTGGCAGCGCGCCGCCGTGGCGGAGATCGCCGACGCGGTG GCCGCCGGCGCCCGGAGCGGGAACGGGACGAAGGGCGCGGGCGTCTGGCTGCTCTTGAAG GGGAGCGACCACGCCGCCGTGCGCCGGGTGGCGGCGGTGATCGCCGAGACGCATTGCGGC TCAGCTGATCGGGTCGTCGTCGTCTCCGCCGATCCCAACAAGTTCGGGTGCGCCGACGAT TTCCGCTCCGACGTCGTCGCGAGAGCGTCCATGGCGGCGGCCGCCGGCGGCAACAAACTC GTGCTCGTCGTTGACGACGTCGAGCGCGCGCCGCAGCACGTCGTGGAATGTCTCGTGGCG GCGTCGAGGAGCGGAGCTCTGAAGGACAAGTTCGGCGGCCAAGAGCTCGATCTCTCGGGC TCCGTAGTGGTCATGACGACATCGAAGCTCGCCGATGCAGCGGTCAGCGGCGTCATCAGC CTACGGCTGTACACGTCGGAGCAGTCGCCGCCGTCCGGGGACCTCAAGAGGAAGACGCCC ACCAGTTCACCACCAACAAGCGACCGCAAGCGCGCACGGGCACGGCGCAGCGCCGGCAAT GGCCACAGCCTCGACCTCAACCTCAACCTCTTCGCCCACGACGACGACGACAACGACGCC GGAGACGTTGACGACGACGACGACGGCGTCCCGAGCGACATAACCCACGAAGGCGGCGGC GACGACTCCGGCGAGCACGGCCACTCGCACCACCGCCTCCTCCTCGAGTCCATCGCCACG CGCGTGGTCACCCTCGACGGCGACCACCACGGCGCCGCGGCCGCCGTCCGCGAGAGGCTG TCGGGGCGGCTCGACGGCGGCGGGCGGGAGCTGCGCGTCGACGGCGAGGCGGCGGCGGCG CTGGCGGCGGCGTCGGGGCACTTCGTCGACGAGGTGATGGAGCGGTGGGTGGCGGAGGTG TTTGAACCGGCGGCGGCAACGGTCAAAAATGGCGGGAAGGCTGTAGTGTTGGGGGTGGGG CCCAGTGGAGGTGGGGCCCACGAGTCAGTAGGGTTCATGGGCTCGGTCCTTCCGAGTAGG GTCCATGTGGACTGA

Peptide Sequence

PEP ID	Os04t0298700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:13220130:13225103:-1 gene:Os04g0298700 transcript:Os04t0298700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clp, N-terminal domain containing protein. (Os04t0298700-01)
Sequence	MRAGAYTIHQSLTAEAAAVLKLALGIARRRGHAQVTPLHVAFALLSPACSPPQQQPAPPP YGLLKRACLRSHPSAAAAVAAHPLQCRALELCFNVALNRLPTSAPHSPPPSSSAPSGAVA PPFASSLIQPNPTLSNALVAALKRAQANQRRGCVELQQQPPPPPPPPPPPVAATAQQQQP LLAIKVELDQLIISILDDPSVSRVMREAGFSSSTVKSNLEGESALMMSTSSSPPPPAIPP HFFLDPSIGVGGNGGGGGGGFMLWPAPFLSSPGMAVPSCKEDVRAVLEVMVRKQGRRTNP VVVGDSVSMAEAVAGELLRRLEGGDVPDELAGAHLLKLQLSYVHVRLMSRADVDAKAAEL RRSVDAVKRGGLVVYVGDLRWALDEDHHHHHHPGADHHNTASSYSPVEHMVAELGRLLGD LRASAPPRGRVWLVATASYQTYMRCRRRRPSLESAWALQAVVVPTGAGTGLALNNLHAVA TTTSNGEPVQQAMVATNHQQQQQQLASPFVAMAAEPAARNELDDKLLVLCTECSHNYERE ASAVKAEAAADEEGPRAAGNLPGWLVPEPPKENYLIELKRKWSRLCRKLHLCGGGDPCSG QSFGAGAYGNGPSSLLPWWSASCLLPNGGGKPSIAGFLGMEALRWSPPAAAALPSLSSLR EPECQDVTTALALGSLPLSDSASSSGGGGGDGAAARELERRLRKNVPWQRAAVAEIADAV AAGARSGNGTKGAGVWLLLKGSDHAAVRRVAAVIAETHCGSADRVVVVSADPNKFGCADD FRSDVVARASMAAAAGGNKLVLVVDDVERAPQHVVECLVAASRSGALKDKFGGQELDLSG SVVVMTTSKLADAAVSGVISLRLYTSEQSPPSGDLKRKTPTSSPPTSDRKRARARRSAGN GHSLDLNLNLFAHDDDDNDAGDVDDDDDGVPSDITHEGGGDDSGEHGHSHHRLLLESIAT RVVTLDGDHHGAAAAVRERLSGRLDGGGRELRVDGEAAAALAAASGHFVDEVMERWVAEV FEPAAATVKNGGKAVVLGVGPSGGGAHESVGFMGSVLPSRVHVD

Transcript Sequence

Transcript ID	Os04t0298700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:13220130:13225103:-1 gene:Os04g0298700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clp, N-terminal domain containing protein. (Os04t0298700-01)
Sequence	AGTGAGCTTCTTGCCTCAGCTTGCAAAGGTGGTGGTGGCGAGAGGAGGAAGACGACGTGG TCGAGGAGGAGAAGAGAAGGCGAGCTGGTTGTTGTTGGATTGGTGTGGGGGGTGGGGGGT GGTGGTGAGCTAGGGATCGATGCGGGCGGGGGCGTACACCATCCACCAGTCGCTCACCGC CGAGGCGGCCGCGGTGCTCAAGCTCGCGCTCGGCATCGCGCGACGCCGCGGTCATGCGCA GGTCACGCCGCTCCACGTCGCGTTCGCGCTGCTGAGCCCGGCGTGCTCGCCGCCGCAGCA GCAGCCGGCGCCGCCGCCGTACGGTCTGCTCAAGCGCGCGTGCCTGCGGTCGCACCCGTC CGCCGCGGCGGCGGTGGCCGCGCACCCGCTCCAGTGCCGTGCGCTCGAGCTCTGCTTCAA CGTCGCGCTCAACCGCCTGCCCACCTCCGCGCCGCACTCGCCGCCCCCGTCGTCGTCCGC GCCGTCGGGCGCCGTGGCGCCGCCGTTCGCGTCGTCGCTCATCCAGCCTAACCCGACGCT CTCCAACGCGCTCGTCGCCGCGCTCAAGCGCGCGCAGGCCAACCAGCGCCGCGGCTGCGT CGAGCTCCAGCAGCAGCCTCCTCCTCCGCCACCGCCGCCGCCGCCGCCGGTGGCTGCCAC GGCGCAGCAGCAGCAGCCGTTGCTCGCCATCAAGGTCGAGCTGGACCAGCTCATCATCTC CATCCTCGACGATCCCAGCGTGAGCCGGGTGATGCGCGAGGCCGGCTTCTCCAGCTCCAC CGTCAAGAGCAACCTCGAGGGGGAGAGCGCGCTCATGATGTCCACCTCATCGTCCCCTCC GCCGCCGGCCATCCCACCTCACTTCTTCCTCGACCCCAGCATTGGCGTCGGCGGCAACGG TGGCGGCGGCGGCGGCGGCTTCATGCTGTGGCCGGCGCCGTTCTTGAGCTCGCCGGGCAT GGCGGTGCCGTCGTGCAAGGAGGACGTGAGGGCGGTATTGGAGGTGATGGTGCGGAAGCA GGGGAGGCGGACCAACCCCGTGGTGGTCGGCGACTCGGTGTCAATGGCGGAAGCCGTCGC CGGCGAGCTCCTGCGGCGGCTGGAGGGCGGCGACGTCCCGGACGAGCTCGCCGGCGCGCA CCTCCTCAAGCTCCAGCTCTCCTACGTCCACGTCCGCCTCATGAGCCGCGCCGACGTGGA CGCCAAGGCCGCCGAGCTCCGCCGCAGCGTCGACGCCGTCAAGCGCGGCGGCCTGGTCGT CTACGTCGGCGACCTCCGCTGGGCGCTCGACGAGGACCACCACCACCACCACCACCCCGG CGCGGACCACCACAACACCGCCTCGTCCTACAGCCCCGTCGAACACATGGTCGCCGAGCT CGGCCGCCTCCTCGGCGACCTCCGAGCCAGCGCGCCGCCGCGCGGGCGCGTCTGGCTCGT CGCCACGGCGAGCTACCAGACATACATGCGATGCCGCCGCCGCCGCCCGTCGCTGGAGTC CGCGTGGGCGCTCCAGGCCGTCGTCGTCCCCACCGGCGCCGGCACCGGCCTGGCCCTCAA CAACCTCCACGCCGTCGCCACCACCACGAGCAATGGAGAGCCTGTGCAGCAGGCCATGGT GGCGACCAACCACCAGCAGCAGCAGCAGCAGCTTGCTAGCCCTTTCGTCGCCATGGCCGC CGAGCCGGCAGCGAGGAACGAGCTGGATGACAAGCTGCTGGTACTCTGCACCGAGTGCAG CCACAACTACGAGAGGGAGGCGTCGGCGGTGAAGGCGGAGGCGGCCGCCGACGAGGAGGG CCCACGCGCCGCCGGTAATCTCCCCGGCTGGCTCGTGCCGGAGCCACCCAAGGAGAACTA TTTGATCGAGCTGAAGAGGAAATGGAGTAGGCTATGCAGAAAGCTTCATCTCTGCGGCGG CGGCGATCCATGCTCAGGTCAGTCGTTTGGAGCTGGAGCTTATGGCAATGGACCAAGCAG CCTCCTCCCATGGTGGTCAGCTTCTTGCTTGCTGCCGAACGGCGGCGGCAAGCCGAGCAT TGCGGGGTTCTTGGGCATGGAGGCGTTGCGGTGGTCGCCGCCGGCGGCGGCGGCGCTGCC GTCCCTGAGTTCTCTGAGGGAGCCGGAGTGCCAGGACGTGACGACGGCGCTCGCGCTCGG CAGCCTCCCGCTCTCGGACTCGGCGTCGTCCTCCGGTGGCGGCGGTGGCGACGGCGCGGC GGCGCGCGAGCTGGAGCGGAGGCTGCGCAAGAACGTGCCGTGGCAGCGCGCCGCCGTGGC GGAGATCGCCGACGCGGTGGCCGCCGGCGCCCGGAGCGGGAACGGGACGAAGGGCGCGGG CGTCTGGCTGCTCTTGAAGGGGAGCGACCACGCCGCCGTGCGCCGGGTGGCGGCGGTGAT CGCCGAGACGCATTGCGGCTCAGCTGATCGGGTCGTCGTCGTCTCCGCCGATCCCAACAA GTTCGGGTGCGCCGACGATTTCCGCTCCGACGTCGTCGCGAGAGCGTCCATGGCGGCGGC CGCCGGCGGCAACAAACTCGTGCTCGTCGTTGACGACGTCGAGCGCGCGCCGCAGCACGT CGTGGAATGTCTCGTGGCGGCGTCGAGGAGCGGAGCTCTGAAGGACAAGTTCGGCGGCCA AGAGCTCGATCTCTCGGGCTCCGTAGTGGTCATGACGACATCGAAGCTCGCCGATGCAGC GGTCAGCGGCGTCATCAGCCTACGGCTGTACACGTCGGAGCAGTCGCCGCCGTCCGGGGA CCTCAAGAGGAAGACGCCCACCAGTTCACCACCAACAAGCGACCGCAAGCGCGCACGGGC ACGGCGCAGCGCCGGCAATGGCCACAGCCTCGACCTCAACCTCAACCTCTTCGCCCACGA CGACGACGACAACGACGCCGGAGACGTTGACGACGACGACGACGGCGTCCCGAGCGACAT AACCCACGAAGGCGGCGGCGACGACTCCGGCGAGCACGGCCACTCGCACCACCGCCTCCT CCTCGAGTCCATCGCCACGCGCGTGGTCACCCTCGACGGCGACCACCACGGCGCCGCGGC CGCCGTCCGCGAGAGGCTGTCGGGGCGGCTCGACGGCGGCGGGCGGGAGCTGCGCGTCGA CGGCGAGGCGGCGGCGGCGCTGGCGGCGGCGTCGGGGCACTTCGTCGACGAGGTGATGGA GCGGTGGGTGGCGGAGGTGTTTGAACCGGCGGCGGCAACGGTCAAAAATGGCGGGAAGGC TGTAGTGTTGGGGGTGGGGCCCAGTGGAGGTGGGGCCCACGAGTCAGTAGGGTTCATGGG CTCGGTCCTTCCGAGTAGGGTCCATGTGGACTGAGCCCACCCAATTTTTGCTCCCCTTTT GGTGTACTAGACTAGACTACTAGTGTCCTTAGTTTTAGTTTCTTTGCATGTAAAAAATTG TGAACTAGGAAATGGAGAATTGGGGGGGGGGGGGGGTTTAATTTATATAAATTCCTTTTC AATTG