Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0290800-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:12645868:12651648:1 gene:Os04g0290800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 1 description:Similar to predicted protein. (Os04t0290800-00)
Sequence

ATGTCCTCCTCGCAATCTCTCCTCCTCCTCGCGGCCCCTCTCTCCCCACCCACCCTTCCC
CGCCTCGTTCCCCCTCCTCCCACCTCCGCTCCCCGCCTCCCCCGCCTCGCCGCCAACCTC
TCCCGCCCGCCACCCCTCGCGATCTCCTCTCCTGGCTGTGATGGCGGTGGTGGTGGCGGA
GGAGGAGGAGGAGGAGGTGGGTGGTGGAGGCAAGGGGGGAGTGGCCCTCCTGACCCCGGC
GACGGGTGGTGGCGGTGGCTCCAGTCGCTCCACCCCGAGCTCCTCCTCCTCTTCGTGCTC
CTCCACTCGGGCGCCTTCGCCGCCATCCCGGCCGCGCTCGCCGAGGCCATCGGCGGTAGC
GGCGGCAGGGAGGGAGCGAGCGTCTGGGAGGTGAGGGGCGGTGCGCGCACGCTGCTCGTG
CCGGACCCGACCGGGACCTCCTACGTCGTCGCGGGAGACGGGAGGCGGAAGCAGGCGGAG
GGGGAGGATGCGGAGAAGGCCGGTGCCGGCCGTGCCGAGCTGGCTGCGCTGCGGCGCCAG
CTGGAGCTGTCGTGGCGGCGGTGCGCCACGGTCGCCGTTCAGCTGCTGCTCCCGGATGGG
TACCCTGACAGCGTGAGCAGCGACTACCTGCAGTACTCGCTGTGGCGCGGCGTGCAGGGC
ATCGCCAGCCAGATCAGTGGCGTGCTCTCGACGCAGGCATTGTTGTATGCGGTTGGATTG
GGGAAAGGCGCTATACCTACCGCGGCAGCGGTGAATTGGGTGCTGAAGGATGGGTTGGGG
TACCTGAGCAAGATATTGCTATCGAAATTCGGCCGGCATTTCGATGTTAACCCAAAGGGG
TGGCGATTGTTCGCCGATCTTCTGGAGAACACGGCTTATGGGCTGGAGATTTTAACTCCG
GTCTTTCCTCACCTGTTTGTTCCAATTGGGGCTGCCGCTGGAGCTGGTCGATCAGCAGCT
GCTTTGATACAGGCTGCCACCAGGAGTTGTTTCTATGCTGGATTTGCTGTGCAAAGGAAC
TTTGCTGAGGTCATTGCAAAGGGTGAGGCACAAGGAATGGTCAGCAAATTCCTGGGGATA
ATGCTAGGGATAGCATTAGCTAATCGCATTGGCTCTTCTGTATCATTAGCTCTTATTTCA
TTTGCTGGAGTTACTGCAGTTCACATGTATTGCAACCTCAAGTCTTATCAATCGATTCAG
CTGAGGACACTGAATCCTTATCGTGCAAGTTTGGTGTTCAGTGAGTATCTATTGAGTGGA
CAAGTTCCTTCAGTCAAAGAGGTTAACGACGAGGAACCCCTTTTCCTGAATCTATCTATT
GGTACTTCACGTAAAGAAAGCAAGATTTTGTCACCACAGGCAAAAGATGCTGCAGAAATA
ATTTGTCGGCGGTTGCAGTTGGGTTCTAAACTTAGTGAAATAATTGAGAACAAGGAAGAT
GCATGCGCATTGTTTGATCTCTACAAAAACGAACAATACCTTCTTACAGAATACAAGGGA
AAATTTTGTGTCATCCTTAAAGAGGGATCTTCTCCTGAAGATATGCTCAAATCTTTATTC
CATGTTAACTATCTCTATTGGTTGGAGAAATATCTGGGCATCAAACCAAGTGATGTTGCC
TCAGCGTGTAGACCTGGTGGAAGGCTTGAAGCATCACTCGATTATACTCAAAGAGAATTT
AGCCATGTCAAACTTGATGGTTCAAATGGTGGCTGGGTGATGGATGGTCTGATTGCTAGA
CCGCTACCCGTAAGAATACGCATAGGAGATGCTCCTTCATAA

Peptide Sequence

PEP ID

Os04t0290800-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:12645868:12651648:1 gene:Os04g0290800 transcript:Os04t0290800-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 1 description:Similar to predicted protein. (Os04t0290800-00)
Sequence

MSSSQSLLLLAAPLSPPTLPRLVPPPPTSAPRLPRLAANLSRPPPLAISSPGCDGGGGGG
GGGGGGGWWRQGGSGPPDPGDGWWRWLQSLHPELLLLFVLLHSGAFAAIPAALAEAIGGS
GGREGASVWEVRGGARTLLVPDPTGTSYVVAGDGRRKQAEGEDAEKAGAGRAELAALRRQ
LELSWRRCATVAVQLLLPDGYPDSVSSDYLQYSLWRGVQGIASQISGVLSTQALLYAVGL
GKGAIPTAAAVNWVLKDGLGYLSKILLSKFGRHFDVNPKGWRLFADLLENTAYGLEILTP
VFPHLFVPIGAAAGAGRSAAALIQAATRSCFYAGFAVQRNFAEVIAKGEAQGMVSKFLGI
MLGIALANRIGSSVSLALISFAGVTAVHMYCNLKSYQSIQLRTLNPYRASLVFSEYLLSG
QVPSVKEVNDEEPLFLNLSIGTSRKESKILSPQAKDAAEIICRRLQLGSKLSEIIENKED
ACALFDLYKNEQYLLTEYKGKFCVILKEGSSPEDMLKSLFHVNYLYWLEKYLGIKPSDVA
SACRPGGRLEASLDYTQREFSHVKLDGSNGGWVMDGLIARPLPVRIRIGDAPS

Transcript Sequence

Transcript ID

Os04t0290800-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:12645868:12651648:1 gene:Os04g0290800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 1 description:Similar to predicted protein. (Os04t0290800-00)
Sequence

GCCGGTCGCCTCCATCGCTGCAAACCCCTCCTCCTCCTCCGCCGCCGCCGCCGGCGGCCA
TAACCAAACCGCTCCTCCGAGATGTCCTCCTCGCAATCTCTCCTCCTCCTCGCGGCCCCT
CTCTCCCCACCCACCCTTCCCCGCCTCGTTCCCCCTCCTCCCACCTCCGCTCCCCGCCTC
CCCCGCCTCGCCGCCAACCTCTCCCGCCCGCCACCCCTCGCGATCTCCTCTCCTGGCTGT
GATGGCGGTGGTGGTGGCGGAGGAGGAGGAGGAGGAGGTGGGTGGTGGAGGCAAGGGGGG
AGTGGCCCTCCTGACCCCGGCGACGGGTGGTGGCGGTGGCTCCAGTCGCTCCACCCCGAG
CTCCTCCTCCTCTTCGTGCTCCTCCACTCGGGCGCCTTCGCCGCCATCCCGGCCGCGCTC
GCCGAGGCCATCGGCGGTAGCGGCGGCAGGGAGGGAGCGAGCGTCTGGGAGGTGAGGGGC
GGTGCGCGCACGCTGCTCGTGCCGGACCCGACCGGGACCTCCTACGTCGTCGCGGGAGAC
GGGAGGCGGAAGCAGGCGGAGGGGGAGGATGCGGAGAAGGCCGGTGCCGGCCGTGCCGAG
CTGGCTGCGCTGCGGCGCCAGCTGGAGCTGTCGTGGCGGCGGTGCGCCACGGTCGCCGTT
CAGCTGCTGCTCCCGGATGGGTACCCTGACAGCGTGAGCAGCGACTACCTGCAGTACTCG
CTGTGGCGCGGCGTGCAGGGCATCGCCAGCCAGATCAGTGGCGTGCTCTCGACGCAGGCA
TTGTTGTATGCGGTTGGATTGGGGAAAGGCGCTATACCTACCGCGGCAGCGGTGAATTGG
GTGCTGAAGGATGGGTTGGGGTACCTGAGCAAGATATTGCTATCGAAATTCGGCCGGCAT
TTCGATGTTAACCCAAAGGGGTGGCGATTGTTCGCCGATCTTCTGGAGAACACGGCTTAT
GGGCTGGAGATTTTAACTCCGGTCTTTCCTCACCTGTTTGTTCCAATTGGGGCTGCCGCT
GGAGCTGGTCGATCAGCAGCTGCTTTGATACAGGCTGCCACCAGGAGTTGTTTCTATGCT
GGATTTGCTGTGCAAAGGAACTTTGCTGAGGTCATTGCAAAGGGTGAGGCACAAGGAATG
GTCAGCAAATTCCTGGGGATAATGCTAGGGATAGCATTAGCTAATCGCATTGGCTCTTCT
GTATCATTAGCTCTTATTTCATTTGCTGGAGTTACTGCAGTTCACATGTATTGCAACCTC
AAGTCTTATCAATCGATTCAGCTGAGGACACTGAATCCTTATCGTGCAAGTTTGGTGTTC
AGTGAGTATCTATTGAGTGGACAAGTTCCTTCAGTCAAAGAGGTTAACGACGAGGAACCC
CTTTTCCTGAATCTATCTATTGGTACTTCACGTAAAGAAAGCAAGATTTTGTCACCACAG
GCAAAAGATGCTGCAGAAATAATTTGTCGGCGGTTGCAGTTGGGTTCTAAACTTAGTGAA
ATAATTGAGAACAAGGAAGATGCATGCGCATTGTTTGATCTCTACAAAAACGAACAATAC
CTTCTTACAGAATACAAGGGAAAATTTTGTGTCATCCTTAAAGAGGGATCTTCTCCTGAA
GATATGCTCAAATCTTTATTCCATGTTAACTATCTCTATTGGTTGGAGAAATATCTGGGC
ATCAAACCAAGTGATGTTGCCTCAGCGTGTAGACCTGGTGGAAGGCTTGAAGCATCACTC
GATTATACTCAAAGAGAATTTAGCCATGTCAAACTTGATGGTTCAAATGGTGGCTGGGTG
ATGGATGGTCTGATTGCTAGACCGCTACCCGTAAGAATACGCATAGGAGATGCTCCTTCA
TAAAACTTCTCAACTTGTTTTGCTCACATCGACGCCGCTAGAATGTGTACAGTGGGTTCA
TTCTTTGGGCAATTTCTGAGACCTTCGCGTCGGGAGTCATGGGGTGATTTGGCATCTTAT
TAACAAGCGTCTGTGAACATATAGTCTTCAATTGTTTGGACACATGATCTAACCATAAGA
GTTTACAATCAAGTTCTCATAAGATTGGAGCTGGTTATGTCTTTTTTTTTTTCATTTGAA
TGTAGGGTGTTTAGTTTGTCGACATTCATGTCATGTAGTGGTTGCTCAGGAAACCAACAG
CACTTCTTGGACAGTAATAGAGAATTAGAGATAAAGACTAACCAGAGCTATGCTTGAGGC
AAGTACTTCTGATTATAGTTGGCTA