Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0289600-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:12588570:12589289:1 gene:Os04g0289600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os04t0289600-01)
Sequence

ATGTCTCCCTTCTACTGCTGCCTCGCCGCCGTCCTGTCGCTGGCGTCGGCGTCGCCGGCC
GCGGCGTCCATCTCGGTGTCCGCCGCCGCGGAGCCTCCGGCCAACAGTTTGTTGCCGGCG
GAGCAGTTCCTGCGGGCTCACAACGAGGCCCGCGCGGCGGTGGGCGTGCCGCCGCTGGCG
TGGAACGCGACGATCGCGCTGGACGCGCAGCGGTACGCCGGCGAGCTCCGGGCGAGCTGC
GAGGCGCGGCCGGTGTGGGCGTGGGGCACCGACGGCTTGTACGGGCGGAACCTGTACAGG
GGGAGCGGCCCGCGGGTGCGCGCGGGCGCGGACGCGTCGGCGCACTGGGCGGAGGGCGCG
CGGTGGTACGACCGCGACGGCGACTCGTGCGCGGCGCCGCCGGGGCGGTGCTGCGGCGAG
TACACGCAGATGGTGTGGCGCGCCACGACGCAGATCGGGTGCGCGCGCTGGTTGTGCCGC
TGCCTGGGCGACACGTGCCCTCTCGTGTTGGACACCGTCGCCGTCTGCGAGTACTACCCG
CCGGGCAACATCGCCGGCCAGCGCCCTTACTAA

Peptide Sequence

PEP ID

Os04t0289600-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:12588570:12589289:1 gene:Os04g0289600 transcript:Os04t0289600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os04t0289600-01)
Sequence

MSPFYCCLAAVLSLASASPAAASISVSAAAEPPANSLLPAEQFLRAHNEARAAVGVPPLA
WNATIALDAQRYAGELRASCEARPVWAWGTDGLYGRNLYRGSGPRVRAGADASAHWAEGA
RWYDRDGDSCAAPPGRCCGEYTQMVWRATTQIGCARWLCRCLGDTCPLVLDTVAVCEYYP
PGNIAGQRPY

Transcript Sequence

Transcript ID

Os04t0289600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:12588570:12589289:1 gene:Os04g0289600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os04t0289600-01)
Sequence

ACAAACAAATTAATCAACCAACACACCATGTCTCCCTTCTACTGCTGCCTCGCCGCCGTC
CTGTCGCTGGCGTCGGCGTCGCCGGCCGCGGCGTCCATCTCGGTGTCCGCCGCCGCGGAG
CCTCCGGCCAACAGTTTGTTGCCGGCGGAGCAGTTCCTGCGGGCTCACAACGAGGCCCGC
GCGGCGGTGGGCGTGCCGCCGCTGGCGTGGAACGCGACGATCGCGCTGGACGCGCAGCGG
TACGCCGGCGAGCTCCGGGCGAGCTGCGAGGCGCGGCCGGTGTGGGCGTGGGGCACCGAC
GGCTTGTACGGGCGGAACCTGTACAGGGGGAGCGGCCCGCGGGTGCGCGCGGGCGCGGAC
GCGTCGGCGCACTGGGCGGAGGGCGCGCGGTGGTACGACCGCGACGGCGACTCGTGCGCG
GCGCCGCCGGGGCGGTGCTGCGGCGAGTACACGCAGATGGTGTGGCGCGCCACGACGCAG
ATCGGGTGCGCGCGCTGGTTGTGCCGCTGCCTGGGCGACACGTGCCCTCTCGTGTTGGAC
ACCGTCGCCGTCTGCGAGTACTACCCGCCGGGCAACATCGCCGGCCAGCGCCCTTACTAA
CGCATATATATGCCGCGGTATATATATGTAGCACATGCACGTGCGAGCTCATAAAATGTT
GTGGTGTAATAACACGTGCGTGATCAACTTTCAAGAACGTTTTTGTTCTTGCATTGGAAC