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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0289500-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:12586386:12586916:1 gene:Os04g0289500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1-related domain containing protein. (Os04t0289500-00)
Sequence

ATGGCTTCCCAGTGCTTCGCTGCCACCACCGGCGCCGGCAATGGCGTCTCGGGCGCGGAC
GCCGGACGCCGCGCGCGTGCCGCGCAGACGGTGGCGGGGATCCTGGCGGTGCACAACGAG
GCGCGGCGCGCGGTGGGCGTGGCGCCACTGGCGTGGAGCGCGGGCATCGCCCGGTACGCG
AAGGGGTACGCAGCGTCGCGGCGCGGCGACTGCGCGCCGCGGCGCTCGCCGCTGTTCAAC
TTCGGCGAGAACGCGTTCGTCGGGAAGGGGCGGCGGTGGAACGCGCCGGCGCTGGCGGCG
GCGTGGGTGGACGAGGGCCGGCGGCGGTACGACTACGGCAGCAACACGTGCGCCGGCGCG
GCGGCGGCCGCGTCGTCCGGGTCGTCGTCGCCGTGCACGCGGTACACGCAGGTGGTGTGG
CGGAACACGACGCAGGTCGGGTGCGGCCGCATCGTGTGCGACTCCGGCGACTCGCTGCTC
GTCTGCGACTACTTCCCGCCGGGGAACTACGGCACCGGCCGACCATACTGA

Peptide Sequence

PEP ID

Os04t0289500-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:12586386:12586916:1 gene:Os04g0289500 transcript:Os04t0289500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1-related domain containing protein. (Os04t0289500-00)
Sequence

MASQCFAATTGAGNGVSGADAGRRARAAQTVAGILAVHNEARRAVGVAPLAWSAGIARYA
KGYAASRRGDCAPRRSPLFNFGENAFVGKGRRWNAPALAAAWVDEGRRRYDYGSNTCAGA
AAAASSGSSSPCTRYTQVVWRNTTQVGCGRIVCDSGDSLLVCDYFPPGNYGTGRPY

Transcript Sequence

Transcript ID

Os04t0289500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:12586386:12586916:1 gene:Os04g0289500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1-related domain containing protein. (Os04t0289500-00)
Sequence

ATGGCTTCCCAGTGCTTCGCTGCCACCACCGGCGCCGGCAATGGCGTCTCGGGCGCGGAC
GCCGGACGCCGCGCGCGTGCCGCGCAGACGGTGGCGGGGATCCTGGCGGTGCACAACGAG
GCGCGGCGCGCGGTGGGCGTGGCGCCACTGGCGTGGAGCGCGGGCATCGCCCGGTACGCG
AAGGGGTACGCAGCGTCGCGGCGCGGCGACTGCGCGCCGCGGCGCTCGCCGCTGTTCAAC
TTCGGCGAGAACGCGTTCGTCGGGAAGGGGCGGCGGTGGAACGCGCCGGCGCTGGCGGCG
GCGTGGGTGGACGAGGGCCGGCGGCGGTACGACTACGGCAGCAACACGTGCGCCGGCGCG
GCGGCGGCCGCGTCGTCCGGGTCGTCGTCGCCGTGCACGCGGTACACGCAGGTGGTGTGG
CGGAACACGACGCAGGTCGGGTGCGGCCGCATCGTGTGCGACTCCGGCGACTCGCTGCTC
GTCTGCGACTACTTCCCGCCGGGGAACTACGGCACCGGCCGACCATACTGA