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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0270200-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:11289925:11294110:-1 gene:Os04g0270200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0172 domain containing protein. (Os04t0270200-01)
Sequence

ATGGGAGCGGAGTGCAAGTACGAGGTGGCGCAGGTGGCGTACGTCAAGCTCGCGCTGCAC
GCCCTCAAGCACCCCGCCGCCGCCGTCAACGGCCTCCTCGTCGGCCGCCTCCTCGACGGG
GCCGCCTCCCCCGCCGCCGTCGTCTCCATCGCCGACGCCGTGCCGCTCTCCCACCACCCG
CACCACCTCCCGCTGCTCCCCACCCTCGAGCTCGCGCTCACGCTCGTCGAGGACCACTTC
GCCGCGCAGGGCCTCGCGGTCGTCGGCTACTACCACGCCAACGCGCGCCGCGACGACGCC
GACCTCCCGCCCGTCGCCAAGCGCGTCGGGGACCACGTCTTCCGCAACTTCCCCCGCGCC
GCCGTACTCCTGCTTGATAACAAGAAGCTGGAGGAGGCAGTCAAGGGGAAGAGTCGCGAG
CCAGTCGTTCAGCTATACACTAGGGATTCATCAAAAAGCTGGCGTCAGGCTGGATCAGAT
GGAAGTAGTCAGCTGACTTTAAAAGAACCATCAACCAATATGGTCTTAGCCGATCATGTT
ACAACGAAGAAATGGCAGCAAGTTGTTGATTTCGATGACCACCTCGATGATATTAGCAAA
GATTGGTTGAACCCAGGGCTACTTGCTTGA

Peptide Sequence

PEP ID

Os04t0270200-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:11289925:11294110:-1 gene:Os04g0270200 transcript:Os04t0270200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0172 domain containing protein. (Os04t0270200-01)
Sequence

MGAECKYEVAQVAYVKLALHALKHPAAAVNGLLVGRLLDGAASPAAVVSIADAVPLSHHP
HHLPLLPTLELALTLVEDHFAAQGLAVVGYYHANARRDDADLPPVAKRVGDHVFRNFPRA
AVLLLDNKKLEEAVKGKSREPVVQLYTRDSSKSWRQAGSDGSSQLTLKEPSTNMVLADHV
TTKKWQQVVDFDDHLDDISKDWLNPGLLA

Transcript Sequence

Transcript ID

Os04t0270200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:11289925:11294110:-1 gene:Os04g0270200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0172 domain containing protein. (Os04t0270200-01)
Sequence

ACACGCTTTGGAGCGAACAGTCCAAGGAGCAGAGCAGCCTTCCTCTTCCTCTCTTCTCCG
ATCGGAAGCAGGCGCGGCGGCGGTAGCGGAAGCGGCAGTCGCCGTAGGAGCGGATCGCGA
TGGGAGCGGAGTGCAAGTACGAGGTGGCGCAGGTGGCGTACGTCAAGCTCGCGCTGCACG
CCCTCAAGCACCCCGCCGCCGCCGTCAACGGCCTCCTCGTCGGCCGCCTCCTCGACGGGG
CCGCCTCCCCCGCCGCCGTCGTCTCCATCGCCGACGCCGTGCCGCTCTCCCACCACCCGC
ACCACCTCCCGCTGCTCCCCACCCTCGAGCTCGCGCTCACGCTCGTCGAGGACCACTTCG
CCGCGCAGGGCCTCGCGGTCGTCGGCTACTACCACGCCAACGCGCGCCGCGACGACGCCG
ACCTCCCGCCCGTCGCCAAGCGCGTCGGGGACCACGTCTTCCGCAACTTCCCCCGCGCCG
CCGTACTCCTGCTTGATAACAAGAAGCTGGAGGAGGCAGTCAAGGGGAAGAGTCGCGAGC
CAGTCGTTCAGCTATACACTAGGGATTCATCAAAAAGCTGGCGTCAGGCTGGATCAGATG
GAAGTAGTCAGCTGACTTTAAAAGAACCATCAACCAATATGGTCTTAGCCGATCATGTTA
CAACGAAGAAATGGCAGCAAGTTGTTGATTTCGATGACCACCTCGATGATATTAGCAAAG
ATTGGTTGAACCCAGGGCTACTTGCTTGAAATAATTATGTGCTTTGATATTTTTATACTT
GTTGGTACCAATATGTTGAGGCTCGTCTCACCAGATTATTGCGGTTCTCTCTATAGCTAG
ACGAGTTATTTGACAGGGTTTGTACTTAAATATGGACAAGTAATTTTTGTAACAAACTGT
AGCATGTGAAAATGCTTAGATCTGCATTAAGATTACTGGCGTTCATGCC