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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0243700-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:9291339:9291856:-1 gene:Os04g0243700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chloroplast targeting RING E3 ligase 1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0243700-01)
Sequence

ATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCG
AGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCC
AGGATCCGTGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGAC
TGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTC
GTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCT
GAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGA

Peptide Sequence

PEP ID

Os04t0243700-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:9291339:9291856:-1 gene:Os04g0243700 transcript:Os04t0243700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chloroplast targeting RING E3 ligase 1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0243700-01)
Sequence

MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRD
CVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF

Transcript Sequence

Transcript ID

Os04t0243700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:9291339:9291856:-1 gene:Os04g0243700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chloroplast targeting RING E3 ligase 1 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0243700-01)
Sequence

GTTGCAGCTCGGTGCATGTGTTTGCACAATGAGCTACCTCCTCTCCTACATCTCCAAGAT
GCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGG
CCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGTGTCGGCGAGGCGACGAGGCGTCT
GCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCG
GACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGC
GAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCT
CGTCCCTGGATTCTGACATGTATATCTCTGATGTCTAAGCGCAATGCTTTTTATTTGTTT
GTTTCCTGCCTGGAAACCGGTTTGTTTTTTTTTTCTTATATTATGCAAATTAACATGACG
ATTTCACGCTTGTAGCGTTTGTATGTACGCTTACGCTC