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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0228400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:8599014:8600248:1 gene:Os04g0228400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 1 description:Expansin precursor (Alpha-expansin OsEXPA1). (Os04t0228400-01)
Sequence

ATGGCCGGCTCGTCAGCCGCAACGTCGTGTGCTCGGTTCCTGGCATTGCTGGCGACATGC
CTCCTCTGGAACGAGGCCGCATCGTTCACGGCGTCCGGCTGGAACAAGGCGTTCGCCACC
TTCTACGGCGGCAGTGACGCTTCAGGAACGATGGGTGGGGCGTGTGGGTACGGGGACCTG
TACTCGACGGGGTACGGGACGAACACGGCGGCGCTGAGCACGGTGCTGTTCAACGACGGG
GCGTCGTGCGGGCAGTGCTACCGGATCATGTGCGACTACCAGGCGGACAGGCGGTTCTGC
ATCTCCGGCACGTCGGTGACCATCACGGCGACCAACCTCTGCCCGCCGAACTACGCGCTC
CCCAACGACGCCGGCGGGTGGTGCAACCCGCCGCGGCAGCACTTCGACATGGCCGAACCG
GCGTGGCTCAAGATCGGCGTCTACGTCGGCGGCATCGTGCCGGTGATGTACCAGCGGGTG
CCGTGCGCCAAGCAGGGCGGGGTGAGGTTCACCATCAACGGCAGGGACTACTTCGAGCTG
GTGCTCGTCTCCAACGTCGGCGGCGTCGGCTCCATCCAGTCGGTGTCGATCAAGGGGTCG
AGGACCGGGTGGATGGCCATGTCCAGGAATTGGGGCGTCAACTGGCAGTCCAACGCCTAC
CTCGACGGCCAGAGCCTGTCGTTCAAGGTCACCAGCAGCGACGGCCAGACGCTCACCTTC
CTCGACGTCGCCCCGGCGGGCTGGACGTTCGGCCAGACCTTCTCGACCTCACAGCAGTTC
TCTTAA

Peptide Sequence

PEP ID

Os04t0228400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:8599014:8600248:1 gene:Os04g0228400 transcript:Os04t0228400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 1 description:Expansin precursor (Alpha-expansin OsEXPA1). (Os04t0228400-01)
Sequence

MAGSSAATSCARFLALLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDL
YSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYAL
PNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFEL
VLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTF
LDVAPAGWTFGQTFSTSQQFS

Transcript Sequence

Transcript ID

Os04t0228400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:8599014:8600248:1 gene:Os04g0228400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 1 description:Expansin precursor (Alpha-expansin OsEXPA1). (Os04t0228400-01)
Sequence

GCCATTAGCAGCACATTCACCGGCAGCACACGCGCGCACACATGGCCGGCTCGTCAGCCG
CAACGTCGTGTGCTCGGTTCCTGGCATTGCTGGCGACATGCCTCCTCTGGAACGAGGCCG
CATCGTTCACGGCGTCCGGCTGGAACAAGGCGTTCGCCACCTTCTACGGCGGCAGTGACG
CTTCAGGAACGATGGGTGGGGCGTGTGGGTACGGGGACCTGTACTCGACGGGGTACGGGA
CGAACACGGCGGCGCTGAGCACGGTGCTGTTCAACGACGGGGCGTCGTGCGGGCAGTGCT
ACCGGATCATGTGCGACTACCAGGCGGACAGGCGGTTCTGCATCTCCGGCACGTCGGTGA
CCATCACGGCGACCAACCTCTGCCCGCCGAACTACGCGCTCCCCAACGACGCCGGCGGGT
GGTGCAACCCGCCGCGGCAGCACTTCGACATGGCCGAACCGGCGTGGCTCAAGATCGGCG
TCTACGTCGGCGGCATCGTGCCGGTGATGTACCAGCGGGTGCCGTGCGCCAAGCAGGGCG
GGGTGAGGTTCACCATCAACGGCAGGGACTACTTCGAGCTGGTGCTCGTCTCCAACGTCG
GCGGCGTCGGCTCCATCCAGTCGGTGTCGATCAAGGGGTCGAGGACCGGGTGGATGGCCA
TGTCCAGGAATTGGGGCGTCAACTGGCAGTCCAACGCCTACCTCGACGGCCAGAGCCTGT
CGTTCAAGGTCACCAGCAGCGACGGCCAGACGCTCACCTTCCTCGACGTCGCCCCGGCGG
GCTGGACGTTCGGCCAGACCTTCTCGACCTCACAGCAGTTCTCTTAAGTAATTAAATATT
AATGAGTTATTACTGGTCCATTCATATATGTGTTTAATTCCGAGCGTATATTATCATCGG
CGTCGGCGTGTAAAGACTAAAGATATATTACTAGTAGCTGTTTGGGTTGCCCACAAGTTT
GGAGCATGCGCGCACAAGTGTTTGGTGTGGCGAGCTATATATATGATTTGCAAGCTAAGG
ACACCTGCTTTTTTCAATGCGAATTAAAACGGTATATATATGTACAGTTTGCGAGGTGCT
TGCCAATCGATGATCGGCATGCTTTACTGTAACGACCACACAAGGAGTTTTCACT