Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0228100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:8586491:8588227:-1 gene:Os04g0228100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0209A05.2 protein. (Os04t0228100-01)
Sequence

ATGGACGCGACGGCGCCGCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTC
CGCACCCGCGTCGACACCATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACG
TGCGGGGTGGAATCCGAGCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGT
GGCCTCGACTCCGTCGCCGCCTCGCTGGCGCAGCTCTCCGACACCCTCACCGCCGCGCAG
AAGGGAGTGAATGCGCTCGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGAT
GAGGAGGAGGAGCCGAAAGCCAAGCGGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGAC
GGCGAGACTCCGGTCGCCGGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCT
GCGGATGCGAAACTGCGTCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAG
AGCACCAATCTGAAGCGTGCCAGAAATCTGGCGGTCTCGATGGCCGGAAGAGCGGCTGCT
CTGGCGAGGGAGCTGAAGAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGT
TTGCTTGAGGAGGAGAACAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAA
GAAGATGACCTGGTGAGGCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCG
CAGGAGAACGCCAACCTGTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCAT
CAGCTGACCTCCCAGGACCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTG
GACTTCTCGTCGCCGCTAGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGA
AGAGTTGCTGTCACTCCATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAG

Peptide Sequence

PEP ID

Os04t0228100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:8586491:8588227:-1 gene:Os04g0228100 transcript:Os04t0228100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0209A05.2 protein. (Os04t0228100-01)
Sequence

MDATAPLLSPASDDRFWDRLRTRVDTILEDRRLVAPPAATCGVESERGKRLREDSLMLVR
GLDSVAASLAQLSDTLTAAQKGVNALATCSSQARECERGDEEEEPKAKRRCSLAETVSFD
GETPVAGADSGEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAA
LARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLA
QENANLSRENQSLIQLVEYHQLTSQDLAESYEDVMEGMRLDFSSPLGKIDSDEEGERENR
RVAVTPSDKLEALESSDE

Transcript Sequence

Transcript ID

Os04t0228100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:8586491:8588227:-1 gene:Os04g0228100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0209A05.2 protein. (Os04t0228100-01)
Sequence

ACGCGAGGAGAGAAAAAACTAGCCGTTGCGCTACTCCTCCGCCATGGACGCGACGGCGCC
GCTGCTCAGCCCCGCCTCCGACGACCGCTTCTGGGACCGCCTCCGCACCCGCGTCGACAC
CATCCTCGAGGACCGCCGCCTCGTCGCTCCCCCCGCCGCCACGTGCGGGGTGGAATCCGA
GCGGGGGAAGCGGCTCAGGGAGGACTCGCTGATGCTGGTGCGTGGCCTCGACTCCGTCGC
CGCCTCGCTGGCGCAGCTCTCCGACACCCTCACCGCCGCGCAGAAGGGAGTGAATGCGCT
CGCCACGTGCTCTTCCCAGGCGAGGGAATGCGAGAGAGGTGATGAGGAGGAGGAGCCGAA
AGCCAAGCGGCGCTGCAGCTTGGCTGAGACGGTGAGCTTCGACGGCGAGACTCCGGTCGC
CGGAGCAGATTCAGGTGAAGGTTCAGAGAAAGAAGAATTAGCTGCGGATGCGAAACTGCG
TCAGGAGAACGGCGGCATTCAGGCCACTTCGGAGGTCGCCAAGAGCACCAATCTGAAGCG
TGCCAGAAATCTGGCGGTCTCGATGGCCGGAAGAGCGGCTGCTCTGGCGAGGGAGCTGAA
GAACATCAAATCGGAGCTGCACTTCATGCAGGAGAGATGCGGTTTGCTTGAGGAGGAGAA
CAAGAGGCTCAGAGAGGGGTATGACAATGGAGTTCCCCCTGAAGAAGATGACCTGGTGAG
GCTGCAATTGGAGGCTCTGCTCGCGGAAAAATCTCGACTGGCGCAGGAGAACGCCAACCT
GTCCAGGGAAAACCAGAGCCTGATTCAGCTGGTGGAGTATCATCAGCTGACCTCCCAGGA
CCTCGCTGAATCTTACGAGGACGTAATGGAGGGGATGCGGCTGGACTTCTCGTCGCCGCT
AGGCAAGATCGACAGCGATGAAGAAGGCGAGCGTGAGAACCGAAGAGTTGCTGTCACTCC
ATCTGATAAGTTGGAAGCCTTGGAGTCATCTGATGAGTAGATAAATCTGAGGAGAATAAG
CTGGGTCTTCTCCAGTGGTGGATTTACTGATGAGTAACAGTATGATCTTCTATTTCTGCT
GTTGTATGATGCTTCAATTTGGCCACTCTCGGTGGCCATATTTATGTGATC