Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0228000-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:8578980:8585626:1 gene:Os04g0228000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os04t0228000-01)
Sequence

ATGTCATCCTTCCAGCTTCTCCTCCACTCCTTGCTCTTGCTTCTCGTCGTTGGCGGCGTC
GCGGGCGGCGGCGGCGGAGGTGGTCGCCTGAGGGCGCCTTCGCTGGAATTCCACCACCGG
TTCTCTTCTCCGGTGCAGCGGTGGGCGGAGGCGCGCGGGCACGTGCTCCCCGGAGGCTGG
CCGGAGCACGGCAGCGCCGATTACGTTGCGGCCCTGAACGGGCACGACCGCCGCCGCGCG
CTCTCAGCAGCCGGCGGCGACGGTGGAGGAGGAGGAGACAAGCCCCCGCCGCTCACGTTT
TCTGAGGGAAACGCCACCCTCAAGGTCAGCAACCTCGGATTCTTGCACTATGCGCTTGTG
ACGGTCGGCACGCCGGGCCAGACGTTCATGGTGGCGCTGGACACCGGGAGTGACCTCTTC
TGGCTGCCGTGCCAGTGTGATGGGTGTACGCCGCCGGCTTCGGCCGCTTCTGGATCGGCT
TCCTTTTACATCCCTAGTATGTCGTCAACAAGCCAAGCAGTTCCTTGCAACAGCCAATTT
TGTGAGCTGAGAAAGGAATGCTCTACAACATCACAGTGTCCATACAAGATGGTTTATGTT
TCTGCAGACACATCTTCTTCTGGTTTTCTAGTAGAGGATGTGCTCTACTTGTCAACAGAG
GATGCCATTCCTCAAATTCTCAAGGCGCAAATACTATTTGGATGTGGACAGGTTCAGACA
GGATCATTTCTGGATGCTGCTGCTCCAAACGGTCTATTTGGACTTGGGATAGATATGATA
TCAATTCCTAGCATTCTAGCACAAAAAGGTCTGACATCTAATTCCTTCGCAATGTGCTTT
AGCCGTGATGGTATTGGGAGAATTAGCTTTGGAGATCAAGGCAGCTCAGATCAAGAGGAG
ACACCACTAGATGTTAACCCACAACATCCTACATATACGATCAGCATCAGTGAGATTACA
GTTGGAAATAGCCTCACGGACTTGGAATTTAGTACTATTTTCGACACAGGAACGTCGTTC
ACATACTTGGCAGACCCAGCTTATACATATATAACACAGAGTTTCCACGCACAAGTTCAT
GCAAATCGCCATGCCGCTGACTCAAGAATTCCTTTTGAATATTGCTATGATCTGAGCTCC
AGTGAAGATAGGATTCAAACTCCTAGTATAAGTTTGAGAACAGTGGGTGGAAGTGTATTT
CCCGTTATTGATGAAGGGCAGGTTATCTCCATTCAGCAACATGAGTATGTTTATTGCTTG
GCGATTGTCAAGAGTGCAAAACTCAATATAATTGGGCAAAATTTCATGACTGGTCTTCGT
GTTGTGTTCGATCGAGAAAGGAAAATTCTTGGTTGGAAGAAATTCAATTGTTATGACACT
GATAGTTCAAATCCTCTTTCTATCAATTCACGGAATTCTTCAGGTTTCTCCCCTTCAGCA
CCTGAGAATTACTCCCCCGAGGAAACAAAGGGTGGGAACCCAGCAAGCGTTACACAGTTG
AGACCCCTTAGTAATTCCAACCCAGTAATGTGGTATGATAGTTTAGTCTTCAGGTTTCTT
TTGGTCAATTTGGCCGCTCTGATCCTCTTCTAA

Peptide Sequence

PEP ID

Os04t0228000-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:8578980:8585626:1 gene:Os04g0228000 transcript:Os04t0228000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os04t0228000-01)
Sequence

MSSFQLLLHSLLLLLVVGGVAGGGGGGGRLRAPSLEFHHRFSSPVQRWAEARGHVLPGGW
PEHGSADYVAALNGHDRRRALSAAGGDGGGGGDKPPPLTFSEGNATLKVSNLGFLHYALV
TVGTPGQTFMVALDTGSDLFWLPCQCDGCTPPASAASGSASFYIPSMSSTSQAVPCNSQF
CELRKECSTTSQCPYKMVYVSADTSSSGFLVEDVLYLSTEDAIPQILKAQILFGCGQVQT
GSFLDAAAPNGLFGLGIDMISIPSILAQKGLTSNSFAMCFSRDGIGRISFGDQGSSDQEE
TPLDVNPQHPTYTISISEITVGNSLTDLEFSTIFDTGTSFTYLADPAYTYITQSFHAQVH
ANRHAADSRIPFEYCYDLSSSEDRIQTPSISLRTVGGSVFPVIDEGQVISIQQHEYVYCL
AIVKSAKLNIIGQNFMTGLRVVFDRERKILGWKKFNCYDTDSSNPLSINSRNSSGFSPSA
PENYSPEETKGGNPASVTQLRPLSNSNPVMWYDSLVFRFLLVNLAALILF

Transcript Sequence

Transcript ID

Os04t0228000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:8578980:8585626:1 gene:Os04g0228000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase A1 domain containing protein. (Os04t0228000-01)
Sequence

AAAAAAAATACTCAAAATTAAAAAGCAAAACCATTTCATCGACACAGCGCCCACAAAACC
GCAAAATCCTCCGCCGCCTCCTCCGGCCGGTAGCGCACGCCGCCGACCACCCGCCGCCGC
GGACGCGACGCCTCCTCTCCCCGATTCGGCCCCGGATCACATGCGGCCACTACCCCGATG
TCATCCTTCCAGCTTCTCCTCCACTCCTTGCTCTTGCTTCTCGTCGTTGGCGGCGTCGCG
GGCGGCGGCGGCGGAGGTGGTCGCCTGAGGGCGCCTTCGCTGGAATTCCACCACCGGTTC
TCTTCTCCGGTGCAGCGGTGGGCGGAGGCGCGCGGGCACGTGCTCCCCGGAGGCTGGCCG
GAGCACGGCAGCGCCGATTACGTTGCGGCCCTGAACGGGCACGACCGCCGCCGCGCGCTC
TCAGCAGCCGGCGGCGACGGTGGAGGAGGAGGAGACAAGCCCCCGCCGCTCACGTTTTCT
GAGGGAAACGCCACCCTCAAGGTCAGCAACCTCGGATTCTTGCACTATGCGCTTGTGACG
GTCGGCACGCCGGGCCAGACGTTCATGGTGGCGCTGGACACCGGGAGTGACCTCTTCTGG
CTGCCGTGCCAGTGTGATGGGTGTACGCCGCCGGCTTCGGCCGCTTCTGGATCGGCTTCC
TTTTACATCCCTAGTATGTCGTCAACAAGCCAAGCAGTTCCTTGCAACAGCCAATTTTGT
GAGCTGAGAAAGGAATGCTCTACAACATCACAGTGTCCATACAAGATGGTTTATGTTTCT
GCAGACACATCTTCTTCTGGTTTTCTAGTAGAGGATGTGCTCTACTTGTCAACAGAGGAT
GCCATTCCTCAAATTCTCAAGGCGCAAATACTATTTGGATGTGGACAGGTTCAGACAGGA
TCATTTCTGGATGCTGCTGCTCCAAACGGTCTATTTGGACTTGGGATAGATATGATATCA
ATTCCTAGCATTCTAGCACAAAAAGGTCTGACATCTAATTCCTTCGCAATGTGCTTTAGC
CGTGATGGTATTGGGAGAATTAGCTTTGGAGATCAAGGCAGCTCAGATCAAGAGGAGACA
CCACTAGATGTTAACCCACAACATCCTACATATACGATCAGCATCAGTGAGATTACAGTT
GGAAATAGCCTCACGGACTTGGAATTTAGTACTATTTTCGACACAGGAACGTCGTTCACA
TACTTGGCAGACCCAGCTTATACATATATAACACAGAGTTTCCACGCACAAGTTCATGCA
AATCGCCATGCCGCTGACTCAAGAATTCCTTTTGAATATTGCTATGATCTGAGCTCCAGT
GAAGATAGGATTCAAACTCCTAGTATAAGTTTGAGAACAGTGGGTGGAAGTGTATTTCCC
GTTATTGATGAAGGGCAGGTTATCTCCATTCAGCAACATGAGTATGTTTATTGCTTGGCG
ATTGTCAAGAGTGCAAAACTCAATATAATTGGGCAAAATTTCATGACTGGTCTTCGTGTT
GTGTTCGATCGAGAAAGGAAAATTCTTGGTTGGAAGAAATTCAATTGTTATGACACTGAT
AGTTCAAATCCTCTTTCTATCAATTCACGGAATTCTTCAGGTTTCTCCCCTTCAGCACCT
GAGAATTACTCCCCCGAGGAAACAAAGGGTGGGAACCCAGCAAGCGTTACACAGTTGAGA
CCCCTTAGTAATTCCAACCCAGTAATGTGGTATGATAGTTTAGTCTTCAGGTTTCTTTTG
GTCAATTTGGCCGCTCTGATCCTCTTCTAATTTGTTTCGGGATGACCTGAATGTAAATTA
GTTATCACGATTACTGTAGATGCACTAGAAGCTGACTAGAGAATACAACATAGAGAACAG
TACTGTATACACGTCCTGTAAATACCGTCCTTTGTGTCGACAATATTGTGTCAAAAGCAA
TTAATTTGTGATGCCGATTTTTGATGGCTCACACTGT